src/hg/inc/geneTree.h 1.1

Index: src/hg/inc/geneTree.h
===================================================================
RCS file: src/hg/inc/geneTree.h
diff -N src/hg/inc/geneTree.h
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/inc/geneTree.h	21 Mar 2010 01:00:44 -0000	1.1
@@ -0,0 +1,62 @@
+/* geneTree.h was originally generated by the autoSql program, which also 
+ * generated geneTree.c and geneTree.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GENETREE_H
+#define GENETREE_H
+
+#define GENETREE_NUM_COLS 2
+
+struct geneTree
+/* A tree that represents the phylogenetic relation between a gene and its orthologs. */
+    {
+    struct geneTree *next;  /* Next in singly linked list. */
+    char *name;	/* Name of gene */
+    char *tree;	/* Newick format of phylogenetic tree */
+    };
+
+void geneTreeStaticLoad(char **row, struct geneTree *ret);
+/* Load a row from geneTree table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct geneTree *geneTreeLoad(char **row);
+/* Load a geneTree from row fetched with select * from geneTree
+ * from database.  Dispose of this with geneTreeFree(). */
+
+struct geneTree *geneTreeLoadAll(char *fileName);
+/* Load all geneTree from whitespace-separated file.
+ * Dispose of this with geneTreeFreeList(). */
+
+struct geneTree *geneTreeLoadAllByChar(char *fileName, char chopper);
+/* Load all geneTree from chopper separated file.
+ * Dispose of this with geneTreeFreeList(). */
+
+#define geneTreeLoadAllByTab(a) geneTreeLoadAllByChar(a, '\t');
+/* Load all geneTree from tab separated file.
+ * Dispose of this with geneTreeFreeList(). */
+
+struct geneTree *geneTreeCommaIn(char **pS, struct geneTree *ret);
+/* Create a geneTree out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new geneTree */
+
+void geneTreeFree(struct geneTree **pEl);
+/* Free a single dynamically allocated geneTree such as created
+ * with geneTreeLoad(). */
+
+void geneTreeFreeList(struct geneTree **pList);
+/* Free a list of dynamically allocated geneTree's */
+
+void geneTreeOutput(struct geneTree *el, FILE *f, char sep, char lastSep);
+/* Print out geneTree.  Separate fields with sep. Follow last field with lastSep. */
+
+#define geneTreeTabOut(el,f) geneTreeOutput(el,f,'\t','\n');
+/* Print out geneTree as a line in a tab-separated file. */
+
+#define geneTreeCommaOut(el,f) geneTreeOutput(el,f,',',',');
+/* Print out geneTree as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* GENETREE_H */
+