angie: changes by file

review to branch (2010-03-16 to 2010-03-23) v227

• src/hg/hgCustom/hgCustom.c
  • 1.140 lines changed: 10, context: html, text, full: html, text
    Use knetUdc (put udc underneath samtools' network code) if KNETFILE_HOOKS.
• src/hg/hgc/bamClick.c
  • 1.20 lines changed: 10, context: html, text, full: html, text
    Use knetUdc (put udc underneath samtools' network code) if KNETFILE_HOOKS.
• src/hg/makeDb/doc/mm9.txt
  • 1.128 lines changed: 25, context: html, text, full: html, text
    IKMC Genes (komp) update.
• src/inc/portable.h
  • 1.30 lines changed: 3, context: html, text, full: html, text
    Converted touchFile to maybeTouchFile because ownership of an existing file (not just permissions) can cause problems.
• src/lib/osunix.c
  • 1.47 lines changed: 13, context: html, text, full: html, text
    Converted touchFile to maybeTouchFile because ownership of an existing file (not just permissions) can cause problems.
• src/lib/udc.c
  • 1.37 lines changed: 6, context: html, text, full: html, text
    Grim reaper can take sparseData but not bitmap (esp. when we touch bitmap), so if bitmap exists but sparseData doesn't, get rid of bitmap. To reduce debugging headaches, use maybeTouchFile instead of touchFile.