src/hg/hgTracks/hgTracks.c 1.1632

1.1632 2010/03/03 19:30:02 angie
Bam track improvements: 1. Enable indel-coloring. 2. Display soft-clipped sequence instead of pretending it doesn't exist.

Index: src/hg/hgTracks/hgTracks.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgTracks/hgTracks.c,v
retrieving revision 1.1631
retrieving revision 1.1632
diff -b -B -U 4 -r1.1631 -r1.1632
--- src/hg/hgTracks/hgTracks.c	19 Feb 2010 02:22:41 -0000	1.1631
+++ src/hg/hgTracks/hgTracks.c	3 Mar 2010 19:30:02 -0000	1.1632
@@ -3162,8 +3162,11 @@
     tg->mapItemName = ctMapItemName;
     hashAdd(tdb->settingsHash, BASE_COLOR_USE_SEQUENCE, cloneString("lfExtra"));
     hashAdd(tdb->settingsHash, BASE_COLOR_DEFAULT, cloneString("diffBases"));
     hashAdd(tdb->settingsHash, SHOW_DIFF_BASES_ALL_SCALES, cloneString("."));
+    hashAdd(tdb->settingsHash, INDEL_DOUBLE_INSERT, cloneString("on"));
+    hashAdd(tdb->settingsHash, INDEL_QUERY_INSERT, cloneString("on"));
+    hashAdd(tdb->settingsHash, INDEL_POLY_A, cloneString("on"));
     hashAdd(tdb->settingsHash, "showDiffBasesMaxZoom", cloneString("100"));
     }
 #endif//def USE_BAM
 else