src/hg/hgc/bamClick.c 1.19

1.19 2010/03/04 05:14:13 angie
Pass sql conn into bamFileNameFromTable, so we can get it from hAllocConnTrack, to support use of hg.conf profiles.

Index: src/hg/hgc/bamClick.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgc/bamClick.c,v
retrieving revision 1.18
retrieving revision 1.19
diff -b -B -U 4 -r1.18 -r1.19
--- src/hg/hgc/bamClick.c	3 Mar 2010 19:30:04 -0000	1.18
+++ src/hg/hgc/bamClick.c	4 Mar 2010 05:14:13 -0000	1.19
@@ -178,9 +178,13 @@
     if (fileName == NULL)
 	errAbort("doBamDetails: can't find bigDataUrl for custom track %s", tdb->tableName);
     }
 else
-    fileName = bamFileNameFromTable(database, tdb->tableName, seqName);
+    {
+    struct sqlConnection *conn = hAllocConnTrack(database, tdb);
+    fileName = bamFileNameFromTable(conn, tdb->tableName, seqName);
+    hFreeConn(&conn);
+    }
 bamFetch(fileName, position, oneBam, &btd);
 if (isPaired)
     {
     char *setting = trackDbSettingOrDefault(tdb, "pairSearchRange", "20000");