src/hg/inc/pgSiftPred.h 1.1

Index: src/hg/inc/pgSiftPred.h
===================================================================
RCS file: src/hg/inc/pgSiftPred.h
diff -N src/hg/inc/pgSiftPred.h
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/inc/pgSiftPred.h	8 Mar 2010 17:52:10 -0000	1.1
@@ -0,0 +1,75 @@
+/* pgSiftPred.h was originally generated by the autoSql program, which also 
+ * generated pgSiftPred.c and pgSiftPred.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef PGSIFTPRED_H
+#define PGSIFTPRED_H
+
+#define PGSIFTPRED_NUM_COLS 11
+
+struct pgSiftPred
+/* sift predictions for pgSnp tracks */
+    {
+    struct pgSiftPred *next;  /* Next in singly linked list. */
+    char *chrom;	/* Chromosome */
+    unsigned *chromStart;	/* Start position in chrom */
+    unsigned *chromEnd;	/* End position in chrom */
+    char *prediction;	/* sifts prediction, damaging, tolerated,... */
+    char *geneId;	/* gene ID, Ensembl */
+    char *geneName;	/* gene name */
+    char *geneDesc;	/* gene description */
+    char *protFamDesc;	/* protein family description */
+    char *omimDisease;	/* OMIM disease */
+    char *aveAlleleFreq;	/* Average allele frequencies */
+    char *ceuAlleleFreq;	/* Caucasian allele frequencies */
+    };
+
+void pgSiftPredStaticLoadWithNull(char **row, struct pgSiftPred *ret);
+/* Load a row from pgSiftPred table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct pgSiftPred *pgSiftPredLoadWithNull(char **row);
+/* Load a pgSiftPred from row fetched with select * from pgSiftPred
+ * from database.  Dispose of this with pgSiftPredFree(). */
+
+struct pgSiftPred *pgSiftPredLoadAll(char *fileName);
+/* Load all pgSiftPred from whitespace-separated file.
+ * Dispose of this with pgSiftPredFreeList(). */
+
+struct pgSiftPred *pgSiftPredLoadAllByChar(char *fileName, char chopper);
+/* Load all pgSiftPred from chopper separated file.
+ * Dispose of this with pgSiftPredFreeList(). */
+
+#define pgSiftPredLoadAllByTab(a) pgSiftPredLoadAllByChar(a, '\t');
+/* Load all pgSiftPred from tab separated file.
+ * Dispose of this with pgSiftPredFreeList(). */
+
+struct pgSiftPred *pgSiftPredCommaIn(char **pS, struct pgSiftPred *ret);
+/* Create a pgSiftPred out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new pgSiftPred */
+
+void pgSiftPredFree(struct pgSiftPred **pEl);
+/* Free a single dynamically allocated pgSiftPred such as created
+ * with pgSiftPredLoad(). */
+
+void pgSiftPredFreeList(struct pgSiftPred **pList);
+/* Free a list of dynamically allocated pgSiftPred's */
+
+void pgSiftPredOutput(struct pgSiftPred *el, FILE *f, char sep, char lastSep);
+/* Print out pgSiftPred.  Separate fields with sep. Follow last field with lastSep. */
+
+#define pgSiftPredTabOut(el,f) pgSiftPredOutput(el,f,'\t','\n');
+/* Print out pgSiftPred as a line in a tab-separated file. */
+
+#define pgSiftPredCommaOut(el,f) pgSiftPredOutput(el,f,',',',');
+/* Print out pgSiftPred as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+#include "pgSnp.h"
+
+void printPgSiftPred (char *db, char *tableName, struct pgSnp *item);
+/* print the predictions for an hgc item click for a pgSnp track */
+
+#endif /* PGSIFTPRED_H */
+