src/hg/makeDb/doc/hg18.txt 1.402

Index: src/hg/makeDb/doc/hg18.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg18.txt,v
retrieving revision 1.401
retrieving revision 1.402
diff -b -B -U 4 -r1.401 -r1.402
--- src/hg/makeDb/doc/hg18.txt	2 Mar 2010 23:04:52 -0000	1.401
+++ src/hg/makeDb/doc/hg18.txt	5 Mar 2010 17:44:57 -0000	1.402
@@ -29382,8 +29382,21 @@
   cd /hive/data/genomes/hg18/bed/par/
   # create hg18.par using the documented coordinates
   hgPar hg18 hg18.par par
 #####################################################################
+# H-INVITATIONAL GENE ANNOTATION DATABASE (Working 2010-0226, chin)
+    #http://h-invitational.jp/hinv/ahg-db/index.jsp
+    # Create knownGene table to reference HINV gene ID's
+    #  for link on knownGenes details page
+    # Also, create an HINV gene track
+
+    # download CDNA file H-InvDB_7.0  (Feb 16, 2010) -- got release # from downloads page).
+    #  ftp://ftp.ddbj.nig.ac.jp/mirror_database/hinv/jbirc_ff/annotation/
+   mkdir /cluster/data/hinv/H-InvDB_7.0
+   cd /cluster/data/hinv/H-InvDB_7.0
+   wget --timestamp \
+ftp://ftp.ddbj.nig.ac.jp/mirror_database/hinv/jbirc_ff/annotation/FCDNA.gz
+
 # HH-Inv(7.0)
     mkdir /hive/data/genomes/hg18/bed/hinv7.0
     cd /hive/data/genomes/hg18/bed/hinv7.0
     cat << '_EOF_' > hinvToBed.pl
@@ -29478,8 +29491,7 @@
     # 4523138 bases of 3107677273 (0.146%) in intersection
 
 
 
-hgsql -e "show tables" hg18 | grep -i hinv
-#####################################################################
 
+# stop here pending answer for seraching with newest version id