src/hg/makeDb/doc/hg18.txt 1.404
1.404 2010/03/12 16:50:16 fanhsu
Re-built hg18 tRNAs track using updated source data.
Index: src/hg/makeDb/doc/hg18.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg18.txt,v
retrieving revision 1.403
retrieving revision 1.404
diff -b -B -U 4 -r1.403 -r1.404
--- src/hg/makeDb/doc/hg18.txt 8 Mar 2010 19:16:10 -0000 1.403
+++ src/hg/makeDb/doc/hg18.txt 12 Mar 2010 16:50:16 -0000 1.404
@@ -29357,9 +29357,9 @@
# track in kent/src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
# use bigWigInfo to check min and max values.
#####################################################################
-# tRNAs track (2010-01-12, Fan DONE)
+# tRNAs track (2010-03-12, Fan RE-BUILT)
#
ssh hgwdev
cd /hive/data/genomes/gs.19/build36/bed
mkdir tRNAs
@@ -29368,19 +29368,20 @@
# Get data files from /projects/lowelab/users/lowe/Browser/vertebrates/
cp -p /projects/lowelab/users/lowe/Browser/vertebrates/hg18-tRNAs.bed .
cp -p \
- /projects/lowelab/users/lowe/Browser/vertebrates/hg18_tRNAs_images.tar.gz\
- .
+ /projects/lowelab/users/lowe/Browser/vertebrates/hg18_tRNAs_images.tar .
hgsql hg18 -e 'drop table if exists tRNAs'
hgLoadBed -tab hg18 tRNAs hg18-tRNAs.bed -sqlTable=$HOME/kent/src/hg/lib/tRNAs.sql
mkdir gif
cd gif
- gzip -d ../hg18_tRNAs_images.tar.gz
- tar -xvf hg18_tRNAs_images.tar
+ tar -xvf ../hg18_tRNAs_images.tar
+ mv images/*.gif .
+ rm -rf images
mkdir /hive/data/gbdb/hg18/RNA-img
+ rm /hive/data/gbdb/hg18/RNA-img/*
cp -p * /hive/data/gbdb/hg18/RNA-img
#####################################################################
# PAR track (2010-02-18, markd DONE)