src/hg/makeDb/doc/hg18.txt 1.404

1.404 2010/03/12 16:50:16 fanhsu
Re-built hg18 tRNAs track using updated source data.
Index: src/hg/makeDb/doc/hg18.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg18.txt,v
retrieving revision 1.403
retrieving revision 1.404
diff -b -B -U 4 -r1.403 -r1.404
--- src/hg/makeDb/doc/hg18.txt	8 Mar 2010 19:16:10 -0000	1.403
+++ src/hg/makeDb/doc/hg18.txt	12 Mar 2010 16:50:16 -0000	1.404
@@ -29357,9 +29357,9 @@
      # track in kent/src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
      # use bigWigInfo to check min and max values. 
       
 #####################################################################
-# tRNAs track (2010-01-12, Fan DONE)
+# tRNAs track (2010-03-12, Fan RE-BUILT)
 #
     ssh hgwdev
     cd /hive/data/genomes/gs.19/build36/bed
     mkdir tRNAs
@@ -29368,19 +29368,20 @@
 # Get data files from /projects/lowelab/users/lowe/Browser/vertebrates/
 
     cp -p /projects/lowelab/users/lowe/Browser/vertebrates/hg18-tRNAs.bed .
     cp -p \
-    /projects/lowelab/users/lowe/Browser/vertebrates/hg18_tRNAs_images.tar.gz\
-    .
+    /projects/lowelab/users/lowe/Browser/vertebrates/hg18_tRNAs_images.tar .
 
     hgsql hg18 -e 'drop table if exists tRNAs'
     hgLoadBed -tab hg18 tRNAs hg18-tRNAs.bed -sqlTable=$HOME/kent/src/hg/lib/tRNAs.sql
 
     mkdir gif
     cd gif
-    gzip -d ../hg18_tRNAs_images.tar.gz
-    tar -xvf hg18_tRNAs_images.tar
+    tar -xvf ../hg18_tRNAs_images.tar
+    mv images/*.gif .
+    rm -rf images
     mkdir /hive/data/gbdb/hg18/RNA-img
+    rm /hive/data/gbdb/hg18/RNA-img/*
     cp -p * /hive/data/gbdb/hg18/RNA-img
 
 #####################################################################
 # PAR track (2010-02-18, markd DONE)