src/hg/makeDb/doc/hg19.txt 1.90
1.90 2010/03/11 00:52:22 fanhsu
Updated tRNAs track build.
Index: src/hg/makeDb/doc/hg19.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg19.txt,v
retrieving revision 1.89
retrieving revision 1.90
diff -b -B -U 4 -r1.89 -r1.90
--- src/hg/makeDb/doc/hg19.txt 5 Mar 2010 17:52:06 -0000 1.89
+++ src/hg/makeDb/doc/hg19.txt 11 Mar 2010 00:52:22 -0000 1.90
@@ -8547,8 +8547,9 @@
# Added a subtrack to trackDb/human/hg19/trackDb.enc.ra to the
# Mapability track.
#####################################################################
# tRNAs track (2010-01-13, Fan DONE)
+# tRNAs track (2010-03-10, Fan RE-BUILT WITH UPDATED DATA FROM TODD LOWE)
#
ssh hgwdev
cd /hive/data/genomes/hg19/bed
mkdir tRNAs
@@ -8557,18 +8558,19 @@
# Get data files from /projects/lowelab/users/lowe/Browser/vertebrates/
cp -p /projects/lowelab/users/lowe/Browser/vertebrates/hg19-tRNAs.bed .
cp -p \
- /projects/lowelab/users/lowe/Browser/vertebrates/hg19_tRNAs_images.tar.gz\
+ /projects/lowelab/users/lowe/Browser/vertebrates/hg19_tRNAs_images.tar\
.
hgsql hg19 -e 'drop table if exists tRNAs'
hgLoadBed -tab hg19 tRNAs hg19-tRNAs.bed -sqlTable=$HOME/kent/src/hg/lib/tRNAs.sql
mkdir gif
cd gif
- gzip -d ../hg19_tRNAs_images.tar.gz
- tar -xvf hg19_tRNAs_images.tar
+ tar -xvf ../hg19_tRNAs_images.tar
+ mv image/* .
+ rmdir image
mkdir /hive/data/gbdb/hg19/RNA-img
cp -p * /hive/data/gbdb/hg19/RNA-img
#####################################################################