src/hg/makeDb/doc/rn4.txt 1.39
1.39 2010/03/12 17:12:24 fanhsu
Rebuilt rn4 tRNAs track using updated data files from Todd Lowe.
Index: src/hg/makeDb/doc/rn4.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/rn4.txt,v
retrieving revision 1.38
retrieving revision 1.39
diff -b -B -U 4 -r1.38 -r1.39
--- src/hg/makeDb/doc/rn4.txt 12 Feb 2010 20:40:05 -0000 1.38
+++ src/hg/makeDb/doc/rn4.txt 12 Mar 2010 17:12:24 -0000 1.39
@@ -5075,9 +5075,9 @@
cat fb.ailMel1.chainRn4Link.txt
# 693099721 bases of 2225124764 (31.149%) in intersection
############################################################################
-# tRNAs track (2010-01-15, Fan DONE)
+# tRNAs track (2010-03-12, Fan RE-BUILT)
#
ssh hgwdev
cd /hive/data/genomes/rn4/bed
mkdir tRNAs
@@ -5086,19 +5086,20 @@
# Get data files from /projects/lowelab/users/lowe/Browser/vertebrates/
cp -p /projects/lowelab/users/lowe/Browser/vertebrates/rn4-tRNAs.bed .
cp -p \
- /projects/lowelab/users/lowe/Browser/vertebrates/rn4_tRNAs_images.tar.gz\
- .
+ /projects/lowelab/users/lowe/Browser/vertebrates/rn4_tRNAs_images.tar .
hgsql rn4 -e 'drop table if exists tRNAs'
hgLoadBed -tab rn4 tRNAs rn4-tRNAs.bed -sqlTable=$HOME/kent/src/hg/lib/tRNAs.sql
mkdir gif
cd gif
- gzip -d ../rn4_tRNAs_images.tar.gz
- tar -xvf rn4_tRNAs_images.tar
+ tar -xvf ../rn4_tRNAs_images.tar
+ cp images/*.gif .
+ rm -rf images
mkdir /hive/data/gbdb/rn4/RNA-img
+ rm /hive/data/gbdb/rn4/RNA-img/*
cp -p * /hive/data/gbdb/rn4/RNA-img
#####################################################################
# INITIAL RGD GENES BUILD (2010-02-12, Fan, DONE)