src/hg/makeDb/doc/rn4.txt 1.39

1.39 2010/03/12 17:12:24 fanhsu
Rebuilt rn4 tRNAs track using updated data files from Todd Lowe.
Index: src/hg/makeDb/doc/rn4.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/rn4.txt,v
retrieving revision 1.38
retrieving revision 1.39
diff -b -B -U 4 -r1.38 -r1.39
--- src/hg/makeDb/doc/rn4.txt	12 Feb 2010 20:40:05 -0000	1.38
+++ src/hg/makeDb/doc/rn4.txt	12 Mar 2010 17:12:24 -0000	1.39
@@ -5075,9 +5075,9 @@
     cat fb.ailMel1.chainRn4Link.txt 
     #	693099721 bases of 2225124764 (31.149%) in intersection
 
 ############################################################################
-# tRNAs track (2010-01-15, Fan DONE)
+# tRNAs track (2010-03-12, Fan RE-BUILT)
 #
     ssh hgwdev
     cd /hive/data/genomes/rn4/bed
     mkdir tRNAs
@@ -5086,19 +5086,20 @@
 # Get data files from /projects/lowelab/users/lowe/Browser/vertebrates/
 
     cp -p /projects/lowelab/users/lowe/Browser/vertebrates/rn4-tRNAs.bed .
     cp -p \
-    /projects/lowelab/users/lowe/Browser/vertebrates/rn4_tRNAs_images.tar.gz\
-    .
+    /projects/lowelab/users/lowe/Browser/vertebrates/rn4_tRNAs_images.tar .
 
     hgsql rn4 -e 'drop table if exists tRNAs'
     hgLoadBed -tab rn4 tRNAs rn4-tRNAs.bed -sqlTable=$HOME/kent/src/hg/lib/tRNAs.sql
 
     mkdir gif
     cd gif
-    gzip -d ../rn4_tRNAs_images.tar.gz
-    tar -xvf rn4_tRNAs_images.tar
+    tar -xvf ../rn4_tRNAs_images.tar
+    cp images/*.gif .
+    rm -rf images
     mkdir /hive/data/gbdb/rn4/RNA-img
+    rm /hive/data/gbdb/rn4/RNA-img/*
     cp -p * /hive/data/gbdb/rn4/RNA-img
 
 #####################################################################
 # INITIAL RGD GENES BUILD (2010-02-12, Fan, DONE)