src/hg/tcga/bamToFastQ/makefile 1.2

Index: src/hg/tcga/bamToFastQ/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/tcga/bamToFastQ/makefile,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 4 -r1.1 -r1.2
--- src/hg/tcga/bamToFastQ/makefile	9 Mar 2010 23:25:57 -0000	1.1
+++ src/hg/tcga/bamToFastQ/makefile	10 Mar 2010 00:21:31 -0000	1.2
@@ -4,8 +4,13 @@
 L += $(MYSQLLIBS) -lm
 MYLIBDIR = ../../../lib/${MACHTYPE}
 MYLIBS =  $(MYLIBDIR)/jkhgap.a ${MYLIBDIR}/jkweb.a
 
+# libbam, will need to change SAMDIR to where it is on your system
+SAMDIR = /cluster/home/jsanborn/samtools
+SAMINC = ${SAMDIR}
+SAMLIB = ${SAMDIR}/libbam.a
+
 ifeq (${USE_BAM},1)
     MYLIBS += ${SAMLIB}
 endif