src/hg/tcga/pBamBam/asBamBam.c 1.6

Index: src/hg/tcga/pBamBam/asBamBam.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/tcga/pBamBam/asBamBam.c,v
retrieving revision 1.5
retrieving revision 1.6
diff -b -B -U 4 -r1.5 -r1.6
--- src/hg/tcga/pBamBam/asBamBam.c	7 Mar 2010 03:28:00 -0000	1.5
+++ src/hg/tcga/pBamBam/asBamBam.c	7 Mar 2010 05:49:45 -0000	1.6
@@ -1185,20 +1185,20 @@
 	msR = '-';
 
     if ( intraR.supp > 0 && 
 	(intraR.qstart < (intraL.qstop + BUF) && intraR.qstop > (intraL.qstart - BUF)) )
-	printf("GIA\t%d\t%3.1f\t%d\t%3.1f\t%c(%d-%d)>%c(%d-%d)\t%c(%d-%d)>%c(%d-%d)", 
+	printf("GIA\t%d\t%3.1f\t%d\t%3.1f\t%c(%s:%d-%d)>%c(%s:%d-%d)\t%c(%s:%d-%d)>%c(%s:%d-%d)", 
 	       intraR.supp, (double) intraR.qual / (double) intraR.supp, 
 	       intraL.supp, (double) intraL.qual / (double) intraL.supp, 
-	       qsR, intraR.qstart, intraR.qstop,
-	       msR, intraR.mstart, intraR.mstop,
-	       qsL, intraL.qstart, intraL.qstop,
-	       msL, intraL.mstart, intraL.mstop);
+	       qsR, d->hL->target_name[intraR.tid], intraR.qstart, intraR.qstop,
+	       msR, d->hL->target_name[intraR.tid], intraR.mstart, intraR.mstop,
+	       qsL, d->hL->target_name[intraL.tid], intraL.qstart, intraL.qstop,
+	       msL, d->hL->target_name[intraL.tid], intraL.mstart, intraL.mstop);
     else
-	printf("SIA\t%d\t%3.1f\t%c(%d-%d)>%c(%d-%d)", 
+	printf("SIA\t%d\t%3.1f\t%c(%s:%d-%d)>%c(%s:%d-%d)", 
 	       intraL.supp, (double) intraL.qual / (double) intraL.supp, 
-	       qsL, intraL.qstart, intraL.qstop, 
-	       msL, intraL.mstart, intraL.mstop);
+	       qsL, d->hL->target_name[intraL.tid], intraL.qstart, intraL.qstop, 
+	       msL, d->hL->target_name[intraL.tid], intraL.mstart, intraL.mstop);
 
     putchar('\n');
 
     reset_intra();