src/utils/qa/knownGene.csh 1.17

Index: src/utils/qa/knownGene.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/knownGene.csh,v
retrieving revision 1.16
retrieving revision 1.17
diff -b -B -U 4 -r1.16 -r1.17
--- src/utils/qa/knownGene.csh	14 Mar 2010 20:34:00 -0000	1.16
+++ src/utils/qa/knownGene.csh	14 Mar 2010 21:51:16 -0000	1.17
@@ -45,13 +45,14 @@
 
 if ($#argv == 0 || $#argv > 2) then
   # no command line args
   echo
-  echo "  runs test suite on Known Genes track."
-  echo "  suggest KG java run in Trackchecking first."
-  echo
-  echo "    usage:  database [oldDb] (if fresh assembly for existing organism)"
-  echo
+  echo "  Runs test suite on Known Genes track."
+  echo "  Before running this script run HGGeneCheck in the same"
+  echo "  directory where you intend to run knownGene.csh ."
+  echo "  Note that this script generates many output files."
+  echo "  
+  echo "    usage:  database1 [database2] Checks db1 on dev and db2 on beta." 
   exit
 else
   set db=$argv[1]
 endif
@@ -62,9 +63,9 @@
   set oldDb=$db
 endif
 
 
-echo "using $db "
+echo "using $db for dev db"
 echo "using $oldDb for beta db "
 set curr_dir=$cwd
 
 #  get sets of KG, GS, PB tables from master list: