src/hg/inc/pgPhenoAssoc.h 1.1

Index: src/hg/inc/pgPhenoAssoc.h
===================================================================
RCS file: src/hg/inc/pgPhenoAssoc.h
diff -N src/hg/inc/pgPhenoAssoc.h
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/inc/pgPhenoAssoc.h	8 Mar 2010 17:52:10 -0000	1.1
@@ -0,0 +1,65 @@
+/* pgPhenoAssoc.h was originally generated by the autoSql program, which also 
+ * generated pgPhenoAssoc.c and pgPhenoAssoc.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef PGPHENOASSOC_H
+#define PGPHENOASSOC_H
+
+#define PGPHENOASSOC_NUM_COLS 5
+
+struct pgPhenoAssoc
+/* phenotypes from various databases for pgSnp tracks */
+    {
+    struct pgPhenoAssoc *next;  /* Next in singly linked list. */
+    char *chrom;	/* Chromosome */
+    unsigned chromStart;	/* Start position in chrom */
+    unsigned chromEnd;	/* End position in chrom */
+    char *name;	/* Phenotype */
+    char *srcUrl;	/* link back to source database */
+    };
+
+void pgPhenoAssocStaticLoad(char **row, struct pgPhenoAssoc *ret);
+/* Load a row from pgPhenoAssoc table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct pgPhenoAssoc *pgPhenoAssocLoad(char **row);
+/* Load a pgPhenoAssoc from row fetched with select * from pgPhenoAssoc
+ * from database.  Dispose of this with pgPhenoAssocFree(). */
+
+struct pgPhenoAssoc *pgPhenoAssocLoadAll(char *fileName);
+/* Load all pgPhenoAssoc from whitespace-separated file.
+ * Dispose of this with pgPhenoAssocFreeList(). */
+
+struct pgPhenoAssoc *pgPhenoAssocLoadAllByChar(char *fileName, char chopper);
+/* Load all pgPhenoAssoc from chopper separated file.
+ * Dispose of this with pgPhenoAssocFreeList(). */
+
+#define pgPhenoAssocLoadAllByTab(a) pgPhenoAssocLoadAllByChar(a, '\t');
+/* Load all pgPhenoAssoc from tab separated file.
+ * Dispose of this with pgPhenoAssocFreeList(). */
+
+struct pgPhenoAssoc *pgPhenoAssocCommaIn(char **pS, struct pgPhenoAssoc *ret);
+/* Create a pgPhenoAssoc out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new pgPhenoAssoc */
+
+void pgPhenoAssocFree(struct pgPhenoAssoc **pEl);
+/* Free a single dynamically allocated pgPhenoAssoc such as created
+ * with pgPhenoAssocLoad(). */
+
+void pgPhenoAssocFreeList(struct pgPhenoAssoc **pList);
+/* Free a list of dynamically allocated pgPhenoAssoc's */
+
+void pgPhenoAssocOutput(struct pgPhenoAssoc *el, FILE *f, char sep, char lastSep);
+/* Print out pgPhenoAssoc.  Separate fields with sep. Follow last field with lastSep. */
+
+#define pgPhenoAssocTabOut(el,f) pgPhenoAssocOutput(el,f,'\t','\n');
+/* Print out pgPhenoAssoc as a line in a tab-separated file. */
+
+#define pgPhenoAssocCommaOut(el,f) pgPhenoAssocOutput(el,f,',',',');
+/* Print out pgPhenoAssoc as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* PGPHENOASSOC_H */
+