src/hg/inc/pgPolyphenPred.h 1.1

Index: src/hg/inc/pgPolyphenPred.h
===================================================================
RCS file: src/hg/inc/pgPolyphenPred.h
diff -N src/hg/inc/pgPolyphenPred.h
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/inc/pgPolyphenPred.h	8 Mar 2010 17:52:10 -0000	1.1
@@ -0,0 +1,73 @@
+/* pgPolyphenPred.h was originally generated by the autoSql program, which also 
+ * generated pgPolyphenPred.c and pgPolyphenPred.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef PGPOLYPHENPRED_H
+#define PGPOLYPHENPRED_H
+
+#define PGPOLYPHENPRED_NUM_COLS 7
+
+struct pgPolyphenPred
+/* polyphen predictions for pgSnp tracks */
+    {
+    struct pgPolyphenPred *next;  /* Next in singly linked list. */
+    char *chrom;	/* Chromosome */
+    unsigned *chromStart;	/* Start position in chrom */
+    unsigned *chromEnd;	/* End position in chrom */
+    char *prediction;	/* polyphens prediction, damaging, benign,... */
+    char *basedOn;	/* prediction basis */
+    char *geneName;	/* gene name */
+    char *aaChange;	/* amino acid change */
+    };
+
+void pgPolyphenPredStaticLoadWithNull(char **row, struct pgPolyphenPred *ret);
+/* Load a row from pgPolyphenPred table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct pgPolyphenPred *pgPolyphenPredLoadWithNull(char **row);
+/* Load a pgPolyphenPred from row fetched with select * from pgPolyphenPred
+ * from database.  Dispose of this with pgPolyphenPredFree(). */
+
+struct pgPolyphenPred *pgPolyphenPredLoadAll(char *fileName);
+/* Load all pgPolyphenPred from whitespace-separated file.
+ * Dispose of this with pgPolyphenPredFreeList(). */
+
+struct pgPolyphenPred *pgPolyphenPredLoadAllByChar(char *fileName, char chopper);
+/* Load all pgPolyphenPred from chopper separated file.
+ * Dispose of this with pgPolyphenPredFreeList(). */
+
+#define pgPolyphenPredLoadAllByTab(a) pgPolyphenPredLoadAllByChar(a, '\t');
+/* Load all pgPolyphenPred from tab separated file.
+ * Dispose of this with pgPolyphenPredFreeList(). */
+
+struct pgPolyphenPred *pgPolyphenPredCommaIn(char **pS, struct pgPolyphenPred *ret);
+/* Create a pgPolyphenPred out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new pgPolyphenPred */
+
+void pgPolyphenPredFree(struct pgPolyphenPred **pEl);
+/* Free a single dynamically allocated pgPolyphenPred such as created
+ * with pgPolyphenPredLoad(). */
+
+void pgPolyphenPredFreeList(struct pgPolyphenPred **pList);
+/* Free a list of dynamically allocated pgPolyphenPred's */
+
+void pgPolyphenPredOutput(struct pgPolyphenPred *el, FILE *f, char sep, char lastSep);
+/* Print out pgPolyphenPred.  Separate fields with sep. Follow last field with lastSep. */
+
+#define pgPolyphenPredTabOut(el,f) pgPolyphenPredOutput(el,f,'\t','\n');
+/* Print out pgPolyphenPred as a line in a tab-separated file. */
+
+#define pgPolyphenPredCommaOut(el,f) pgPolyphenPredOutput(el,f,',',',');
+/* Print out pgPolyphenPred as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+#include "pgSnp.h"
+
+void printPgPolyphenPred (char *db, char *tableName, struct pgSnp *item);
+/* print the predictions for an hgc item click for a pgSnp track */
+
+
+#endif /* PGPOLYPHENPRED_H */
+
+