src/hg/makeDb/trackDb/affyExonTissues.html 1.7

Index: src/hg/makeDb/trackDb/affyExonTissues.html
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RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/affyExonTissues.html,v
retrieving revision 1.6
retrieving revision 1.7
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--- src/hg/makeDb/trackDb/affyExonTissues.html	29 Jul 2009 01:43:14 -0000	1.6
+++ src/hg/makeDb/trackDb/affyExonTissues.html	12 Mar 2010 00:41:40 -0000	1.7
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 <H2>Methods</H2>
 <P>
 RNA (from a commercial source) from 11 tissues were hybridized to Affymetrix 
 $Organism Exon 1.0 ST arrays. For each tissue, 3 replicate experiments were 
 performed 
 for a total of 33 arrays.  The raw intensity signal from the arrays
 was normalized
 with a quantile normalization method, then run through the PLIER algorithm.
 The normalized data were then converted to median-centered log-ratios, 
 which are displayed as green for negative log-ratios (below-median expression),
 and red for positive (above-median expression).</P>
 
 <P>The probe sets for this microarray track are shown in the 
 the <B>Affy Exon Probes</B> track.</P>
 
 <H2>Credits</H2>
 <P>
 This track was produced by Andy Pohl, Kayla Smith, and Pauline Fujita of the 
 genome browser group at UCSC, Melissa Cline of the 
 <A HREF="http://ribonode.ucsc.edu/" TARGET=_blank>Ares lab</A> at UCSC, and 
 Chuck Sugnet at <A HREF="http://www.affymetrix.com/" TARGET=_blank>Affymetrix</A>, based on 
 <A HREF="http://www.affymetrix.com/support/technical/sample_data/exon_array_data.affx">
 sample exon array data</A> available from Affymetrix, produced by Tyson Clark. 
 </P>
 
 <H2>References</H2>
 <P>
 Pohl AA, Sugnet CW, Clark TA, Smith K, Fujita PA, Cline MS.
 Affy Exon Tissues: Exon Levels in Normal Tissues in Human, Mouse, and Rat.
-<B>Bioinformatics</B>. In press.
+<I>Bioinformatics</I>.2009 Sept 15;25(18):2442-3. 
 </P>
 <H2>Links</H2>
 <P><UL><LI>
 <A HREF="http://www.affymetrix.com/products/arrays/specific/exon.affx">Affymetrix $Organism Exon 1.0 ST array web page</A></LI>
 <LI><A HREF="http://www.affymetrix.com/support/technical/sample_data/exon_array_data.affx">Affymetrix $Organism Exon data</A></LI>
 <LI><A HREF="http://www.affymetrix.com/support/technical/technotes/plier_technote.pdf">PLIER algorithm documentation (PDF).</A></LI></UL></P>