src/hg/regulate/regCluster/makefile 1.2

1.2 2010/03/10 19:31:19 kent
Making it so that it will break up clusters that are weakly linked.
Index: src/hg/regulate/regCluster/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/regulate/regCluster/makefile,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 1000000 -r1.1 -r1.2
--- src/hg/regulate/regCluster/makefile	8 Mar 2010 23:35:07 -0000	1.1
+++ src/hg/regulate/regCluster/makefile	10 Mar 2010 19:31:19 -0000	1.2
@@ -1,18 +1,23 @@
 include ../../../inc/common.mk
 
 L += -lm
 MYLIBDIR = ../../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkweb.a
 
 A = regCluster
 O = regCluster.o
 
 regCluster: ${O} ${MYLIBS}
 	${CC} ${COPT} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} $L
 	${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
 
 compile:: ${O}
 	${CC} ${COPT} -o ${A}${EXE} ${O} ${MYLIBS} $L
 
 clean::
 	rm -f ${A} ${O}
+
+test:
+	cd tests/needBreak; regCluster -weakLevel=0.3 in.tab out.cluster out.bed
+	diff tests/needBreak/expected.cluster tests/needBreak/out.cluster
+	diff tests/needBreak/expected.bed tests/needBreak/out.bed