src/hg/tcga/bamToFastQ/makefile 1.1

Index: src/hg/tcga/bamToFastQ/makefile
===================================================================
RCS file: src/hg/tcga/bamToFastQ/makefile
diff -N src/hg/tcga/bamToFastQ/makefile
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/tcga/bamToFastQ/makefile	9 Mar 2010 23:25:57 -0000	1.1
@@ -0,0 +1,23 @@
+USE_BAM = 1
+include ../../../inc/common.mk
+
+L += $(MYSQLLIBS) -lm
+MYLIBDIR = ../../../lib/${MACHTYPE}
+MYLIBS =  $(MYLIBDIR)/jkhgap.a ${MYLIBDIR}/jkweb.a
+
+ifeq (${USE_BAM},1)
+    MYLIBS += ${SAMLIB}
+endif
+
+A = bamToFastQ
+O = bamToFastQ.o
+
+bamToFastQ: ${O} ${MYLIBS}
+	${CC} ${COPT} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} $L
+	${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
+
+compile:: ${O}
+	${CC} ${COPT} -o ${A}${EXE} ${O} ${MYLIBS} $L
+
+clean::
+	rm -f ${A} ${O}