hiram: changes by file

branch to review (2010-03-02 to 2010-03-16) v227

• src/cdnaAli/makefile
  • 1.5 lines changed: 3, context: html, text, full: html, text
    need to clean in g2cCheck
• src/hg/lib/hdb.c
  • 1.420 lines changed: 3, context: html, text, full: html, text
    find defaultGenome from hg.conf if present
• src/hg/makeDb/makefile
  • 1.45 lines changed: 3, context: html, text, full: html, text
    need to clean hgTomRough
• src/hg/makeDb/trackDb/human/hg19/trackDb.chainNet.ra
  • 1.2 lines changed: 1, context: html, text, full: html, text
    replace tetNig1 with tetNig2 chainNet
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.100 lines changed: 6, context: html, text, full: html, text
    replace tetNig1 with tetNig2 in vertebrate chainNet
• src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.ra
  • 1.3 lines changed: 37, context: html, text, full: html, text
    adding 13-way definition
• src/hg/mouseStuff/makefile
  • 1.23 lines changed: 3, context: html, text, full: html, text
    Well, we need a clean in simpleChain
• src/hg/pslCDnaFilter/makefile
  • 1.14 lines changed: 1, context: html, text, full: html, text
    need to clean algo.msg for clean target
• src/hg/pslPartition/makefile
  • 1.6 lines changed: 3, context: html, text, full: html, text
    needed a clean target
• src/hg/snp/makefile
  • 1.4 lines changed: 6, context: html, text, full: html, text
    add clean target and use curly braces on variables
• src/isPcr/makefile
  • 1.2 lines changed: 5, context: html, text, full: html, text
    need a clean target
• src/lib/osunix.c
  • 1.46 lines changed: 1, context: html, text, full: html, text
    fix semiUniqName when host name includes : as in: localhost:8080 (from 41,000 ft)
• src/product/ex.hg.conf
  • 1.22 lines changed: 19, context: html, text, full: html, text
    add defaultGenome variable discussion, pointer to README.udc and fixup comments for downloadsServer
• src/xenoAli/makefile
  • 1.4 lines changed: 5, context: html, text, full: html, text
    need clean targets everywhere here
• src/xenoAli/bwana/makefile
  • 1.8 lines changed: 3, context: html, text, full: html, text
    need clean targets everywhere here
• src/xenoAli/dynAlign/makefile
  • 1.9 lines changed: 3, context: html, text, full: html, text
    need a clean target
• src/xenoAli/stitcher/makefile
  • 1.8 lines changed: 3, context: html, text, full: html, text
    need clean targets everywhere here