jsanborn: changes by commit

branch to review (2010-03-02 to 2010-03-16) v227

• initial commit
  • src/hg/tcga/bamToFastQ/bamToFastQ.c 1.1 - lines changed: 146, context: html, text, full: html, text
  • src/hg/tcga/bamToFastQ/makefile 1.1 - lines changed: 23, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/asBamBam.c 1.1 - lines changed: 944, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/makefile 1.6 - lines changed: 9, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/pBamBamMuts.c 1.3 - lines changed: 10, context: html, text, full: html, text
• added profile to gh object for cancer public server
  • src/hg/instinct/hgHeatmap2/drawingCode.c 1.78 - lines changed: 4, context: html, text, full: html, text
  • src/hg/instinct/hgHeatmap2/hgCircleMaps.c 1.13 - lines changed: 1, context: html, text, full: html, text
  • src/hg/instinct/hgHeatmap2/hgHeatmap2.c 1.82 - lines changed: 0, context: html, text, full: html, text
  • src/hg/instinct/hgHeatmap2/hgHeatmapData/datasets.ra 1.34 - lines changed: 1, context: html, text, full: html, text
  • src/hg/instinct/hgHeatmap2/hgToolTip.c 1.10 - lines changed: 5, context: html, text, full: html, text
  • src/hg/instinct/inc/hgHeatmapLib.h 1.40 - lines changed: 3, context: html, text, full: html, text
  • src/hg/instinct/lib/hgHeatmapLib.c 1.66 - lines changed: 32, context: html, text, full: html, text
• changed back profile entry
  • src/hg/instinct/hgHeatmap2/hgHeatmapData/datasets.ra 1.35 - lines changed: 1, context: html, text, full: html, text
• updated to correctly output paired ends
  • src/hg/tcga/bamToFastQ/bamToFastQ.c 1.3 - lines changed: 92, context: html, text, full: html, text
• fixed getHeatmaps to look at two databases
  • src/hg/instinct/hgHeatmap2/hgHeatmap2.c 1.83 - lines changed: 25, context: html, text, full: html, text
  • src/hg/instinct/inc/hgHeatmapLib.h 1.41 - lines changed: 2, context: html, text, full: html, text
  • src/hg/instinct/lib/hgHeatmapLib.c 1.67 - lines changed: 9, context: html, text, full: html, text
• updated
  • src/hg/instinct/hgBed15ToArrayVal/hgBed15ToArrayVal.c 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/tcga/bamToFastQ/bamToFastQ.c 1.2 - lines changed: 65, context: html, text, full: html, text
  • src/hg/tcga/bamToFastQ/makefile 1.2 - lines changed: 5, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/asBamBam.c 1.9 - lines changed: 84, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/asBamBam.c 1.8 - lines changed: 366, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/asBamBam.c 1.7 - lines changed: 24, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/asBamBam.c 1.6 - lines changed: 8, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/asBamBam.c 1.5 - lines changed: 4, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/asBamBam.c 1.4 - lines changed: 205, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/asBamBam.c 1.3 - lines changed: 162, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/asBamBam.c 1.2 - lines changed: 577, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/makefile 1.7 - lines changed: 5, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/makefile 1.5 - lines changed: 12, context: html, text, full: html, text
  • src/hg/tcga/pBamBam/pBamBamMuts.c 1.2 - lines changed: 50, context: html, text, full: html, text