pauline: changes by file

branch to review (2010-03-02 to 2010-03-16) v227

• java/src/edu/ucsc/genome/qa/cgiCheck/canFam1.props
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Fixed references to old location of tables on beta.
• java/src/edu/ucsc/genome/qa/cgiCheck/ci1.props
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Fixed references to old location of tables on beta.
• java/src/edu/ucsc/genome/qa/cgiCheck/hg17.props
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Fixed references to old location of tables on beta.
• java/src/edu/ucsc/genome/qa/cgiCheck/hgw1.props
  • 1.4 lines changed: 2, context: html, text, full: html, text
    Fixed references to old location of tables on beta.
• java/src/edu/ucsc/genome/qa/cgiCheck/mm5.props
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Fixed references to old location of tables on beta.
• java/src/edu/ucsc/genome/qa/cgiCheck/quick.props
  • 1.6 lines changed: 1, context: html, text, full: html, text
    Fixed references to old location of tables on beta.
• java/src/edu/ucsc/genome/qa/cgiCheck/quickAll.props
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Fixed references to old location of tables on beta.
• src/hg/makeDb/trackDb/affyExonTissues.html
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Finally committing an old ref update change.
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.920 lines changed: 10, context: html, text, full: html, text
    Changing shortLabels to be consistent across a cell line
  • 1.919 lines changed: 30, context: html, text, full: html, text
    Forgot to commit this removal of alphas.
  • 1.903 lines changed: 1, context: html, text, full: html, text
    Fixed reference to html file to restore description to RR version of track.
• src/utils/qa/knownGene.csh
  • 1.18 lines changed: 1, context: html, text, full: html, text
    Fixing a bug I introduced. Oops!
  • 1.17 lines changed: 7, context: html, text, full: html, text
    Editing usage statement for clarity
  • 1.16 lines changed: 13, context: html, text, full: html, text
    Fixed some typos, an unmatched quote and clarified description statement.
• src/utils/qa/qaEncodeTracks.csh
  • 1.8 lines changed: 1, context: html, text, full: html, text
    Added the other two file formats implied by bbi for clarity.