tdreszer: changes by file

branch to review (2010-03-02 to 2010-03-16) v227

• src/hg/encode/encodeValidate/config/cv.ra
  • 1.214 lines changed: 47, context: html, text, full: html, text
    Moved certain terms from 'Control' to explicitly 'input'
• src/hg/encode/encodeValidate/config/fields.ra
  • 1.26 lines changed: 5, context: html, text, full: html, text
    Added 'input'
• src/hg/hgTracks/hgTracks.c
  • 1.1634 lines changed: 2, context: html, text, full: html, text
    utils.js needs to be there whether advancedJavascriptFeatures is on or not
• src/hg/hgTracks/imageV2.c
  • 1.26 lines changed: 1, context: html, text, full: html, text
    Fix bug with map area clicking
  • 1.25 lines changed: 2, context: html, text, full: html, text
    Move some javascript code into c to speed handling massive images
• src/hg/hgTracks/simpleTracks.c
  • 1.128 lines changed: 7, context: html, text, full: html, text
    Change which is currently ifdeffed out, that avoids warning
• src/hg/hgc/encodeClick.c
  • 1.12 lines changed: 2, context: html, text, full: html, text
    Replaced 2 cgiString calls with cartString calls.
• src/hg/js/hgTracks.js
  • 1.61 lines changed: 13, context: html, text, full: html, text
    Fix bug with map area clicking
  • 1.60 lines changed: 1, context: html, text, full: html, text
    Fixed postToSaveSettings 'this' should have been 'obj'
  • 1.59 lines changed: 41, context: html, text, full: html, text
    Move some javascript code into c to speed handling massive images
• src/hg/js/utils.js
  • 1.29 lines changed: 5, context: html, text, full: html, text
    Minor change to clarify, though I don't think postTheForm has ever been called without the href
• src/hg/makeDb/doc/encodeDccHg18/broadChipSeqRelease3Lists.txt
  • 1.2 lines changed: 10, context: html, text, full: html, text
    Included index.html and others
• src/hg/makeDb/doc/encodeDccHg18/haibTfsbRelease2Lists.txt
  • 1.5 lines changed: 13, context: html, text, full: html, text
    Only rep2 for HepG2/SRF so promoting it to rep1
• src/hg/makeDb/doc/encodeDccHg18/openChromatinR3.notes.txt
  • 1.3 lines changed: 250, context: html, text, full: html, text
    Reworked paths - again
  • 1.2 lines changed: 592, context: html, text, full: html, text
    Reworked paths and included index.html
• src/hg/makeDb/doc/encodeDccHg18/uwDnaseSeq.release3.notes.txt
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Making sure all of Jurkat files/tables are treated as if new. Thanks Katrina for noticing this problem.
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.911 lines changed: 25, context: html, text, full: html, text
    Removed revoked crud and set up html for YDH TFSB release2 so that Release3 can proceed
  • 1.910 lines changed: 21, context: html, text, full: html, text
    Added HeLa/Brg1/IgG-mus as last holdout from Jan 2010 freeze to YDH TFBS
  • 1.909 lines changed: 75, context: html, text, full: html, text
    Unrevoked HUVEC for YDH TFBS now that input is loaded.
  • 1.907 lines changed: 44, context: html, text, full: html, text
    Renamed tables and files to match metadata on Yale TFSB
  • 1.906 lines changed: 203, context: html, text, full: html, text
    Loaded in missing IgG-rab input for Yale TFBS
  • 1.905 lines changed: 1657, context: html, text, full: html, text
    alpha/beta ize Yale TFBS
  • 1.904 lines changed: 1, context: html, text, full: html, text
    Getting ready for release3
  • 1.902 lines changed: 12, context: html, text, full: html, text
    Noticed some more discrepencies
  • 1.901 lines changed: 157, context: html, text, full: html, text
    Changed a whole lot of Seqs to seqs
  • 1.900 lines changed: 10, context: html, text, full: html, text
    HAIB TFBS HepG2/SRF has only one replicate which has been renamed rep1
• src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html
  • 1.29 lines changed: 42, context: html, text, full: html, text
    Getting ready for release3
• src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMapRelease2.html
  • 1.1 lines changed: 331, context: html, text, full: html, text
    Getting ready for release3
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html
  • 1.23 lines changed: 1, context: html, text, full: html, text
    Release 2 should go out in March 2010 hopefully
• src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseqRelease2.html
  • 1.1 lines changed: 217, context: html, text, full: html, text
    Getting ready for Release3
• src/lib/cheapcgi.c
  • 1.133 lines changed: 1, context: html, text, full: html, text
    halfVis not ready for primetime, because ff and ie can't agree
  • 1.132 lines changed: 1, context: html, text, full: html, text
    Fixed halfVis style