src/hg/makeDb/doc/ailMel1.txt 1.6
1.6 2010/03/30 21:15:30 chinhli
Adding BLASTZ, Chain/Net Support
Index: src/hg/makeDb/doc/ailMel1.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/ailMel1.txt,v
retrieving revision 1.5
retrieving revision 1.6
diff -b -B -U 4 -r1.5 -r1.6
--- src/hg/makeDb/doc/ailMel1.txt 30 Mar 2010 16:01:48 -0000 1.5
+++ src/hg/makeDb/doc/ailMel1.txt 30 Mar 2010 21:15:30 -0000 1.6
@@ -292,12 +292,8 @@
cat fb.felCatV17e.chainAilMel1Link.txt
# 1503647735 bases of 1990635005 (75.536%) in intersection
- # need to change name back due to the seq1 and seq2 switch
- # more TODO XXXX 03/29
- # name ???cat fb.ailMel1.chainFelCatV17eLink.txt
- # ???? 2047068864 bases of 2897316137 (70.654%) in intersection
mkdir /hive/data/genomes/felCatV17e/bed/blastz.ailMel1.swap
cd /hive/data/genomes/felCatV17e/bed/blastz.ailMel1.swap
time nice -n +19 doBlastzChainNet.pl -verbose=2 \
/hive/data/genomes/ailMel1/bed/lastzFelCatV17e.2010-03-22/DEF \