src/hg/makeDb/doc/susScr2.txt 1.4
1.4 2010/04/01 16:37:15 chinhli
Remove grep 829.2 command
Index: src/hg/makeDb/doc/susScr2.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/susScr2.txt,v
retrieving revision 1.3
retrieving revision 1.4
diff -b -B -U 4 -r1.3 -r1.4
--- src/hg/makeDb/doc/susScr2.txt 31 Mar 2010 21:13:19 -0000 1.3
+++ src/hg/makeDb/doc/susScr2.txt 1 Apr 2010 16:37:15 -0000 1.4
@@ -288,9 +288,9 @@
'_EOF_'
# << happy emacs
export S=../../genbank/Sscrofa9.2/Primary_Assembly/assembled_chromosomes
-cut -f2 ${S}/chr2acc | grep 829.2 | while read ACC
+cut -f2 ${S}/chr2acc | while read ACC
do
C=`grep "${ACC}" ${S}/chr2acc | cut -f1`
zcat ${S}/AGP/chr${C}.agp.gz \
| sed -e "s/^${ACC}/chr${C}/"