src/hg/utils/automation/EnsGeneAutomate.pm 1.22

Index: src/hg/utils/automation/EnsGeneAutomate.pm
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/utils/automation/EnsGeneAutomate.pm,v
retrieving revision 1.21
retrieving revision 1.22
diff -b -B -U 4 -r1.21 -r1.22
--- src/hg/utils/automation/EnsGeneAutomate.pm	25 Mar 2010 22:46:26 -0000	1.21
+++ src/hg/utils/automation/EnsGeneAutomate.pm	2 Apr 2010 16:39:53 -0000	1.22
@@ -1064,9 +1064,9 @@
 my %ensGeneGtfFileNames_56 = (
 'anoCar1' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar1.0.56.gtf.gz',
 'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.56.gtf.gz',
 'ce7' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS200.56.gtf.gz',
-'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.calJac3.56.gtf.gz' ,
+'calJac2' => 'callithrix_jacchus/Callithrix_jacchus.calJac3.56.gtf.gz' ,
 'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.56.gtf.gz',
 'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.56.gtf.gz',
 'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.56.gtf.gz',
 'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.56.gtf.gz',
@@ -1118,9 +1118,9 @@
 my %ensGeneFtpPeptideFileNames_56 = (
 'anoCar1' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar1.0.56.pep.all.fa.gz',
 'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.56.pep.all.fa.gz',
 'ce7' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS200.56.pep.all.fa.gz',
-'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.calJac3.56.pep.all.fa.gz',
+'calJac2' => 'callithrix_jacchus/pep/Callithrix_jacchus.calJac3.56.pep.all.fa.gz',
 'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.56.pep.all.fa.gz',
 'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.56.pep.all.fa.gz',
 'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.56.pep.all.fa.gz',
 'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.56.pep.all.fa.gz',
@@ -1172,9 +1172,9 @@
 #	'assembly' table copies for GeneScaffold coordinate conversions
 my %ensGeneFtpMySqlFileNames_56 = (
 'anoCar1' =>  'anolis_carolinensis_core_56_1a' ,
 'bosTau4' => 'bos_taurus_core_56_4e' ,
-'calJac3' => 'callithrix_jacchus_core_56_3' ,
+'calJac2' => 'callithrix_jacchus_core_56_3' ,
 'canFam2' => 'canis_familiaris_core_56_2m' ,
 'cavPor3' => 'cavia_porcellus_core_56_3a',
 'ce7' => 'caenorhabditis_elegans_core_56_200' ,
 'choHof1' => 'choloepus_hoffmanni_core_56_1a',
@@ -1227,9 +1227,9 @@
 my %ensGeneGtfFileNames_57 = (
 'anoCar1' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar1.0.57.gtf.gz',
 'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.57.gtf.gz',
 'ce7' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS200.57.gtf.gz',
-'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.calJac3.57.gtf.gz',
+'calJac2' => 'callithrix_jacchus/Callithrix_jacchus.calJac3.57.gtf.gz',
 'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.57.gtf.gz',
 'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.57.gtf.gz',
 'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.57.gtf.gz',
 'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.57.gtf.gz',
@@ -1282,9 +1282,9 @@
 my %ensGeneFtpPeptideFileNames_57 = (
 'anoCar1' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar1.0.57.pep.all.fa.gz',
 'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.57.pep.all.fa.gz',
 'ce7' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS200.57.pep.all.fa.gz',
-'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.calJac3.57.pep.all.fa.gz',
+'calJac2' => 'callithrix_jacchus/pep/Callithrix_jacchus.calJac3.57.pep.all.fa.gz',
 'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.57.pep.all.fa.gz',
 'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.57.pep.all.fa.gz',
 'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.57.pep.all.fa.gz',
 'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.57.pep.all.fa.gz',
@@ -1337,9 +1337,9 @@
 #	'assembly' table copies for GeneScaffold coordinate conversions
 my %ensGeneFtpMySqlFileNames_57 = (
 'anoCar1' => 'anolis_carolinensis_core.57.1a' ,
 'bosTau4' => 'bos_taurus_core.57.4f' ,
-'calJac3' => 'callithrix_jacchus_core.57.3' ,
+'calJac2' => 'callithrix_jacchus_core.57.3' ,
 'canFam2' => 'canis_familiaris_core.57.2m' ,
 'cavPor3' => 'cavia_porcellus_core.57.3a',
 'ce7' => 'caenorhabditis_elegans_core.57.200a' ,
 'choHof1' => 'choloepus_hoffmanni_core.57.1a',