src/hg/utils/automation/EnsGeneAutomate.pm 1.23

Index: src/hg/utils/automation/EnsGeneAutomate.pm
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/utils/automation/EnsGeneAutomate.pm,v
retrieving revision 1.22
retrieving revision 1.23
diff -b -B -U 4 -r1.22 -r1.23
--- src/hg/utils/automation/EnsGeneAutomate.pm	2 Apr 2010 16:39:53 -0000	1.22
+++ src/hg/utils/automation/EnsGeneAutomate.pm	5 Apr 2010 20:31:55 -0000	1.23
@@ -1335,60 +1335,60 @@
 
 #	directory name under release-50/mysql/ to find 'seq_region' and
 #	'assembly' table copies for GeneScaffold coordinate conversions
 my %ensGeneFtpMySqlFileNames_57 = (
-'anoCar1' => 'anolis_carolinensis_core.57.1a' ,
-'bosTau4' => 'bos_taurus_core.57.4f' ,
-'calJac2' => 'callithrix_jacchus_core.57.3' ,
-'canFam2' => 'canis_familiaris_core.57.2m' ,
-'cavPor3' => 'cavia_porcellus_core.57.3a',
-'ce7' => 'caenorhabditis_elegans_core.57.200a' ,
-'choHof1' => 'choloepus_hoffmanni_core.57.1a',
-'ci2' => 'ciona_intestinalis_core.57.2m',
-'cioSav2' => 'ciona_savignyi_core.57.2h',
-'danRer6' => 'danio_rerio_core.57.8c',
-'dasNov2' => 'dasypus_novemcinctus_core.57.2a',
-'dipOrd1' => 'dipodomys_ordii_core.57.1c',
-'dm5' => 'drosophila_melanogaster_core.57.513b' ,
-'echTel1' => 'echinops_telfairi_core.57.1g',
-'equCab2' => 'equus_caballus_core.57.2d',
-'eriEur1' => 'erinaceus_europaeus_core.57.1e',
-'felCat3' => 'felis_catus_core.57.1f',
-'galGal3' => 'gallus_gallus_core.57.2m',
-'gasAcu1' => 'gasterosteus_aculeatus_core.57.1j',
-'gorGor3' => 'gorilla_gorilla_core.57.3',
-'hg19' => 'homo_sapiens_core.57.37b',
-'loxAfr3' => 'loxodonta_africana_core.57.3',
-'rheMac2' => 'macaca_mulatta_core.57.10l',
-'macEug1' => 'macropus_eugenii_core.57.1',
-'micMur1' => 'microcebus_murinus_core.57.1b',
+'anoCar1' => 'anolis_carolinensis_core_57_1a' ,
+'bosTau4' => 'bos_taurus_core_57_4f' ,
+'calJac2' => 'callithrix_jacchus_core_57_3' ,
+'canFam2' => 'canis_familiaris_core_57_2m' ,
+'cavPor3' => 'cavia_porcellus_core_57_3a',
+'ce7' => 'caenorhabditis_elegans_core_57_200a' ,
+'choHof1' => 'choloepus_hoffmanni_core_57_1a',
+'ci2' => 'ciona_intestinalis_core_57_2m',
+'cioSav2' => 'ciona_savignyi_core_57_2h',
+'danRer6' => 'danio_rerio_core_57_8c',
+'dasNov2' => 'dasypus_novemcinctus_core_57_2a',
+'dipOrd1' => 'dipodomys_ordii_core_57_1c',
+'dm5' => 'drosophila_melanogaster_core_57_513b' ,
+'echTel1' => 'echinops_telfairi_core_57_1g',
+'equCab2' => 'equus_caballus_core_57_2d',
+'eriEur1' => 'erinaceus_europaeus_core_57_1e',
+'felCat3' => 'felis_catus_core_57_1f',
+'galGal3' => 'gallus_gallus_core_57_2m',
+'gasAcu1' => 'gasterosteus_aculeatus_core_57_1j',
+'gorGor3' => 'gorilla_gorilla_core_57_3',
+'hg19' => 'homo_sapiens_core_57_37b',
+'loxAfr3' => 'loxodonta_africana_core_57_3',
+'rheMac2' => 'macaca_mulatta_core_57_10l',
+'macEug1' => 'macropus_eugenii_core_57_1',
+'micMur1' => 'microcebus_murinus_core_57_1b',
 'melGal1' => 'meleagris_gallopavo_core_57_2',
-'monDom5' => 'monodelphis_domestica_core.57.5i',
-'mm9' => 'mus_musculus_core.57.37j',
-'myoLuc1' => 'myotis_lucifugus_core.57.1g',
-'ochPri2' => 'ochotona_princeps_core.57.1c',
-'ornAna1' => 'ornithorhynchus_anatinus_core.57.1k',
-'oryCun2' => 'oryctolagus_cuniculus_core.57.2',
+'monDom5' => 'monodelphis_domestica_core_57_5i',
+'mm9' => 'mus_musculus_core_57_37j',
+'myoLuc1' => 'myotis_lucifugus_core_57_1g',
+'ochPri2' => 'ochotona_princeps_core_57_1c',
+'ornAna1' => 'ornithorhynchus_anatinus_core_57_1k',
+'oryCun2' => 'oryctolagus_cuniculus_core_57_2',
 
-'oryLat2' => 'oryzias_latipes_core.57.1i',
-'otoGar1' => 'otolemur_garnettii_core.57.1e',
-'panTro2' => 'pan_troglodytes_core.57.21l',
-'ponAbe2' => 'pongo_pygmaeus_core.57.1c',
-'proCap1' => 'procavia_capensis_core.57.1c',
-'pteVam1' => 'pteropus_vampyrus_core.57.1c',
-'rn4' => 'rattus_norvegicus_core.57.34y',
-'sacCer2' => 'saccharomyces_cerevisiae_core.57.1j',
-'sorAra1' => 'sorex_araneus_core.57.1e',
-'speTri1' => 'spermophilus_tridecemlineatus_core.57.1g',
-'susScr1' => 'sus_scrofa_core.57.9a' ,
-'taeGut1' => 'taeniopygia_guttata_core.57.1c',
-'fr2' => 'takifugu_rubripes_core.57.4k',
-'tarSyr1' => 'tarsius_syrichta_core.57.1c',
-'tetNig2' => 'tetraodon_nigroviridis_core.57.8b',
-'tupBel1' => 'tupaia_belangeri_core.57.1f',
-'turTru1' => 'tursiops_truncatus_core.57.1c',
-'vicPac1' => 'vicugna_pacos_core.57.1c',
-'xenTro2' => 'xenopus_tropicalis_core.57.41n',
+'oryLat2' => 'oryzias_latipes_core_57_1i',
+'otoGar1' => 'otolemur_garnettii_core_57_1e',
+'panTro2' => 'pan_troglodytes_core_57_21l',
+'ponAbe2' => 'pongo_pygmaeus_core_57_1c',
+'proCap1' => 'procavia_capensis_core_57_1c',
+'pteVam1' => 'pteropus_vampyrus_core_57_1c',
+'rn4' => 'rattus_norvegicus_core_57_34y',
+'sacCer2' => 'saccharomyces_cerevisiae_core_57_1j',
+'sorAra1' => 'sorex_araneus_core_57_1e',
+'speTri1' => 'spermophilus_tridecemlineatus_core_57_1g',
+'susScr1' => 'sus_scrofa_core_57_9a' ,
+'taeGut1' => 'taeniopygia_guttata_core_57_1c',
+'fr2' => 'takifugu_rubripes_core_57_4k',
+'tarSyr1' => 'tarsius_syrichta_core_57_1c',
+'tetNig2' => 'tetraodon_nigroviridis_core_57_8b',
+'tupBel1' => 'tupaia_belangeri_core_57_1f',
+'turTru1' => 'tursiops_truncatus_core_57_1c',
+'vicPac1' => 'vicugna_pacos_core_57_1c',
+'xenTro2' => 'xenopus_tropicalis_core_57_41n',
 );
 
 my @versionList = qw( 57 56 55 54 52 51 50 49 48 47 46 35 );