rhead: changes by file

review to branch (2010-03-30 to 2010-04-06) v228

• java/src/edu/ucsc/genome/qa/cgiCheck/TrackCheck.java
  • 1.14 lines changed: 19, context: html, text, full: html, text
    Made TrackCheck output much less verbose, changed links printed to be the same as those that produce the error, added the props file information to the first of the TrackCheck output, and removed some extra commented-out lines.
• java/src/edu/ucsc/genome/qa/lib/HgTracks.java
  • 1.19 lines changed: 6, context: html, text, full: html, text
    Made TrackCheck output much less verbose, changed links printed to be the same as those that produce the error, added the props file information to the first of the TrackCheck output, and removed some extra commented-out lines.
• java/src/edu/ucsc/genome/qa/lib/TestTarget.java
  • 1.7 lines changed: 10, context: html, text, full: html, text
    Added a toString function in order to print target information in TrackCheck output.
• src/hg/makeDb/trackDb/human/trackDb.chainNet.ra
  • 1.39 lines changed: 2, context: html, text, full: html, text
    Changing the panTro1 chain and net shortLabel overrides to really match the chainNet override.
• src/hg/makeDb/trackDb/worm/ce4/trackDb.ra
  • 1.44 lines changed: 2, context: html, text, full: html, text
    Added release beta,public to chainCb3 and netCb3 to make them work with the non-composite versions at the worm level.