braney: changes by file

branch to review (2010-03-23 to 2010-03-30) v228

• src/hg/encode/encodeLoad/doEncodeLoad.pl
  • 1.75 lines changed: 49, context: html, text, full: html, text
    add bigWig
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.219 lines changed: 18, context: html, text, full: html, text
    add support for BAM download only
• src/hg/encode/validateFiles/makefile
  • 1.5 lines changed: 4, context: html, text, full: html, text
    add a couple of tests for bigWig and BAM
• src/hg/encode/validateFiles/validateFiles.c
  • 1.37 lines changed: 12, context: html, text, full: html, text
    fix up some printf's and add flag allowing non-native chroms
• src/hg/encode/validateFiles/tests/test3.bam
  • 1.1 lines changed: 0, context: html, text, full: html, text
    a simple BAM test
• src/hg/encode/validateFiles/tests/test3.right.txt
  • 1.1 lines changed: 0, context: html, text, full: html, text
    a simple BAM test
• src/hg/encode/validateFiles/tests/test4.bw
  • 1.1 lines changed: 0, context: html, text, full: html, text
    a small test for bigWig
• src/hg/encode/validateFiles/tests/test4.right.txt
  • 1.1 lines changed: 0, context: html, text, full: html, text
    a small test for bigWig
• src/hg/makeDb/trackDb/human/hg19/encHaibMethylRrbs.html
  • 1.2 lines changed: 4, context: html, text, full: html, text
    some small edits, addition of link to protocol
• src/hg/utils/automation/Encode.pm
  • 1.60 lines changed: 1, context: html, text, full: html, text
    add bigWig