src/utils/qa/countRows.csh 1.12

Index: src/utils/qa/countRows.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/countRows.csh,v
retrieving revision 1.11
retrieving revision 1.12
diff -b -B -U 1000000 -r1.11 -r1.12
--- src/utils/qa/countRows.csh	16 Sep 2009 21:09:55 -0000	1.11
+++ src/utils/qa/countRows.csh	24 Mar 2010 17:18:18 -0000	1.12
@@ -1,54 +1,76 @@
 #!/bin/tcsh
 source `which qaConfig.csh`
 
 ################################
 #  05-19-04
 #  gets the rowcount for a list of tables.
 #
 ################################
 
 set db=""
 set tablelist=""
 set tables=""
 set dev=""
 set beta=""
 set rr=""
+set doGenomeMysql=false
+set genomeMysql=""
 
-if ($#argv != 2) then
+if ($#argv < 2 || $#argv > 3) then
   echo
   echo "  gets the rowcount for a list of tables from dev, beta and RR."
   echo
   echo "    usage:  database tablelist"
   echo "      tablelist can be just name of single table"
   echo
   echo "    RR results not in real time, but from dumps"
+    echo "    genome-mysql option adds results from public mysql server"
   echo
   exit
 else
   set db=$argv[1]
   set tablelist=$argv[2]     # file of tablenames or single table name
 endif
 
+if ( $#argv == 3 ) then
+  if ( $argv[3] == "genome-mysql" ) then
+    set doGenomeMysql=true
+  else
+    echo
+    echo 'error.  third argument must be "genome-mysql"'
+    $0
+    echo
+    exit 1
+  endif
+endif
+
 echo
 if ( -e $tablelist ) then
   echo "running countRows for tables:"
   set tables=`cat $tablelist`
   echo "$tables"
   echo
 else
   set tables=$tablelist
 endif
 
 foreach table ( $tables )
   set dev=`hgsql -N -e "SELECT COUNT(*) FROM $table" $db` 
   set beta=`hgsql -h $sqlbeta -N -e "SELECT COUNT(*) FROM $table" $db`
   set rr=` getRRtableStatus.csh $db $table Rows`
+  if ( $doGenomeMysql == true ) then
+    set genomeMysql=`mysql -N -h genome-mysql -u genome -A -e "SELECT COUNT(*) FROM $table" $db`
+  endif
   echo $table
   echo "============="
   echo "."$dev 
   echo "."$beta 
   echo
   echo "."$rr
+  if ( $doGenomeMysql == true ) then
+    echo "."$genomeMysql
+    echo
+  endif
   echo
 end