tdreszer: changes by file

branch to review (2010-03-23 to 2010-03-30) v228

• src/hg/encode/DAFs/2.0/dukeDnaseSeq.daf
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Cleaned up the composite and dataType suffixes
• src/hg/encode/DAFs/2.0/stanfordChipSeq.daf
  • 1.3 lines changed: 3, context: html, text, full: html, text
    Cleaned up the composite and dataType suffixes
• src/hg/encode/DAFs/2.0/stanfordHg19Hist.daf
  • 1.1 lines changed: 43, context: html, text, full: html, text
    Initial check in of a subset of the stanford DAFs
• src/hg/encode/DAFs/2.0/stanfordHg19HistInput.daf
  • 1.1 lines changed: 37, context: html, text, full: html, text
    Initial check in of a subset of the stanford DAFs
• src/hg/encode/DAFs/2.0/stanfordHg19Tfbs.daf
  • 1.1 lines changed: 43, context: html, text, full: html, text
    Initial check in of a subset of the stanford DAFs
• src/hg/encode/DAFs/2.0/stanfordHg19TfbsInput.daf
  • 1.1 lines changed: 37, context: html, text, full: html, text
    Initial check in of a subset of the stanford DAFs
• src/hg/encode/DAFs/2.0/stanfordMm9Tfbs.daf
  • 1.1 lines changed: 43, context: html, text, full: html, text
    Initial check in of a subset of the stanford DAFs
• src/hg/encode/DAFs/2.0/stanfordMm9TfbsInput.daf
  • 1.1 lines changed: 37, context: html, text, full: html, text
    Initial check in of a subset of the stanford DAFs
• src/hg/encode/DAFs/2.0/uncFaireSeq.daf
  • 1.4 lines changed: 2, context: html, text, full: html, text
    Cleaned up the composite and dataType suffixes
• src/hg/encode/DAFs/2.0/utAustinChipSeq.daf
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Cleaned up the composite and dataType suffixes
• src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl
  • 1.31 lines changed: 9, context: html, text, full: html, text
    Fixed bug that prevented non-metaTbl metadata from showing up without special flag
  • 1.30 lines changed: 17, context: html, text, full: html, text
    Expanded to a near complet sort order list, added noMetaTbl option to compare old and new metadata methods, expanded fileMask to include bigWig, bigBed and BAM.
• src/hg/encode/encodeValidate/config/cv.ra
  • 1.217 lines changed: 103, context: html, text, full: html, text
    Added missing JunD description and antibody validation document variable
• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
  • 1.31 lines changed: 89, context: html, text, full: html, text
    Added link for antibody validation documents. Now if we can just get some.
• src/hg/hgc/encodeClick.c
  • 1.14 lines changed: 1, context: html, text, full: html, text
    Peaks and Points oh my
  • 1.13 lines changed: 1, context: html, text, full: html, text
    Point peaks should be 1 based.
• src/hg/inc/metaTbl.h
  • 1.5 lines changed: 19, context: html, text, full: html, text
    Some adjustments recommened by Mark in code review
• src/hg/lib/hui.c
  • 1.268 lines changed: 5, context: html, text, full: html, text
    Fix to evaluating subtrackFourStateChecked checkBox
  • 1.267 lines changed: 3, context: html, text, full: html, text
    Handle slightly changed metaTbl API
• src/hg/lib/metaTbl.c
  • 1.6 lines changed: 82, context: html, text, full: html, text
    Some adjustments recommened by Mark in code review
  • 1.5 lines changed: 26, context: html, text, full: html, text
    Check for metaTbl before querying.
• src/hg/makeDb/doc/encodeDccHg18/openChromatinR3.notes.txt
  • 1.5 lines changed: 2, context: html, text, full: html, text
    Added one more Zinba peak
  • 1.4 lines changed: 26, context: html, text, full: html, text
    Last minute addition of Zinba peaks
• src/hg/makeDb/metaTblUpdate/metaTblPrint.c
  • 1.4 lines changed: 13, context: html, text, full: html, text
    Some adjustments recommended by Mark in code reivew
• src/hg/makeDb/metaTblUpdate/metaTblUpdate.c
  • 1.5 lines changed: 10, context: html, text, full: html, text
    Some adjustments recommended by Mark in code reivew
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.935 lines changed: 25, context: html, text, full: html, text
    Added one Zinba peak and changed the view from Zinba Peaks to Peaks Zinba
  • 1.934 lines changed: 2, context: html, text, full: html, text
    Forgot to set dateResubmitted
  • 1.933 lines changed: 2, context: html, text, full: html, text
    Corrected metadata for 2 HAIB TFBS tracks that needed to be resubmitted
  • 1.932 lines changed: 3, context: html, text, full: html, text
    Zinba peaks have qValue and no pValue
  • 1.931 lines changed: 75, context: html, text, full: html, text
    Added Zinba peaks to FAIRE portion of Open Chrom
• src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.html
  • 1.48 lines changed: 9, context: html, text, full: html, text
    Ready for release3