src/hg/archaeStuff/data/Genome-info-mods 1.99
1.99 2010/04/18 20:54:19 pchan
new archaeal genomes added by Andrew H.; remove old Geobacter genomes and replace with new ones
Index: src/hg/archaeStuff/data/Genome-info-mods
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/archaeStuff/data/Genome-info-mods,v
retrieving revision 1.98
retrieving revision 1.99
diff -b -B -U 4 -r1.98 -r1.99
--- src/hg/archaeStuff/data/Genome-info-mods 19 Feb 2010 23:27:32 -0000 1.98
+++ src/hg/archaeStuff/data/Genome-info-mods 18 Apr 2010 20:54:19 -0000 1.99
@@ -48,8 +48,10 @@
DB_name: archFulg1
Iso_pub: 17777850
Rel_date: Dec 1997
Sp_info: <I>A. fulgidus</I> is a sulfur-metabolizing anaerobe that grows optimally around 83C. High-temperature sulfate reduction by Archaeoglobus species contributes to deep subsurface oil-well 'souring' by iron sulfide, which causes corrosion of iron and steel in oil-and gas-processing systems.
+Multiz: Archaeoglobaceae ferrPlac1 archProf1 archFulg1
+Phylo: ((archFulg1,archProf1),ferrPlac1)
Org_abr: Aero_pern
DB_name: aerPer1
Iso_pub: 8863437
@@ -81,21 +83,21 @@
DB_name: halMar1
Iso_pub: 11536469
Rel_date: Nov. 2004
Sp_info: <I>H. marismortui</I> is a halophilic archaeon found in the Dead Sea, where it optimally grows at around 4.5 molar salt.
-Multiz: HalophilesPriv natrPhar1 haloWals1 haloUtah1 haloVolc1_1 natrMaga0 haloHalo1 haloSali1
-Public_multiz: Halophiles natrPhar1 haloWals1 haloUtah1 haloVolc1 haloHalo1 haloSali1
-Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga0),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
+Multiz: HalophilesPriv natrPhar1 haloWals1 haloUtah1 haloVolc1_1 natrMaga1 haloHalo1 haloSali1
+Public_multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1 natrMaga1 haloTurk1 haloLacu1 haloMuko1
+Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga1),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
Public_phylo: (((((haloHalo1,haloSali1),haloUtah1),natrPhar1),halMar1),(haloWals1,haloVolc1))
Org_abr: Halo_sp
DB_name: haloHalo1
Rel_date: Oct 2000
Sp_info: <I>Halobacterium</I> is a halophilic aerobic euryarchaeon found under conditions of extremely high salinity, at an optimum of 4.3M salt. It is a mesophile which grows optimally at 42C. A well-developed genetic system is available for this species.
-Multiz: HalophilesPriv haloSali1 natrMaga0 haloVolc1_1 natrPhar1 haloWals1 halMar1 haloUtah1
-Public_multiz: Halophiles haloSali1 haloVolc1 natrPhar1 haloWals1 halMar1 haloUtah1
-Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga0),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
-Public_phylo: (((((haloHalo1,haloSali1),haloUtah1),natrPhar1),halMar1),(haloWals1,haloVolc1))
+Multiz: HalophilesPriv haloSali1 natrMaga1 haloVolc1_1 natrPhar1 haloWals1 halMar1 haloUtah1
+Public_multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1 natrMaga1 haloTurk1 haloLacu1 haloMuko1
+Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga1),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
+Public_phylo: ((((natrPhar1,((haloUtah1,(haloSali1,haloHalo1)),(haloMuko1,halMar1))),(haloTurk1,natrMaga1)),haloLacu1),haloWals1,haloVolc1)
SP_ID: HALSA
Org_abr: Halo_sali_R1
Menu_name: Halobacterium salinarum R1
@@ -104,24 +106,24 @@
Seq_src: Max Planck Institute
Name_chg: chr plasmid_PHS1 plasmid_PHS4 plasmid_PHS3 plasmid_PHS2
SP_ID: HALSA
Iso_pub:
-Multiz: HalophilesPriv haloHalo1 natrMaga0 haloVolc1_1 natrPhar1 haloWals1 halMar1 haloUtah1
-Public_multiz: Halophiles haloHalo1 haloVolc1 natrPhar1 haloWals1 halMar1 haloUtah1
-Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga0),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
-Public_phylo: (((((haloHalo1,haloSali1),haloUtah1),natrPhar1),halMar1),(haloWals1,haloVolc1))
+Multiz: HalophilesPriv haloHalo1 natrMaga1 haloVolc1_1 natrPhar1 haloWals1 halMar1 haloUtah1
+Public_multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1 natrMaga1 haloTurk1 haloLacu1 haloMuko1
+Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga1),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
+Public_phylo: ((((natrPhar1,((haloUtah1,(haloSali1,haloHalo1)),(haloMuko1,halMar1))),(haloTurk1,natrMaga1)),haloLacu1),haloWals1,haloVolc1)
Org_abr: Halo_wals
Rel_date: 07/25/06
Seq_src: Max-Planck-Institute of Biochemistry and the University of Groningen
Pub_id: 16820047
DB_name: haloWals1
#Iso_pub: 15560825
SP_ID: HALWD HALMA HALSP NATPD
-Multiz: HalophilesPriv haloVolc1_1 halMar1 haloUtah1 natrPhar1 natrMaga0 haloHalo1 haloSali1
-Public_multiz: Halophiles haloVolc1 halMar1 haloUtah1 natrPhar1 haloHalo1 haloSali1
-Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga0),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
-Public_phylo: (((((haloHalo1,haloSali1),haloUtah1),natrPhar1),halMar1),(haloWals1,haloVolc1))
+Multiz: HalophilesPriv haloVolc1_1 halMar1 haloUtah1 natrPhar1 natrMaga1 haloHalo1 haloSali1
+Public_multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1 natrMaga1 haloTurk1 haloLacu1 haloMuko1
+Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga1),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
+Public_phylo: ((((natrPhar1,((haloUtah1,(haloSali1,haloHalo1)),(haloMuko1,halMar1))),(haloTurk1,natrMaga1)),haloLacu1),haloWals1,haloVolc1)
Org_abr: Halo_volc_DS2
Org_name: Haloferax volcanii DS2
Menu_name: Haloferax volcanii
@@ -142,12 +144,12 @@
Seq_size: 2847757 635786 437906 85092 6359
Seq_GC: 66.64 61.67 65.56 55.5 56.06
Gene_ct: 4209
Gb_acc: None
-Multiz: HalophilesPriv haloWals1 natrPhar1 natrMaga0 haloHalo1 haloSali1 halMar1 haloUtah1
-Public_multiz: Halophiles haloWals1 natrPhar1 haloHalo1 haloSali1 halMar1 haloUtah1
-Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga0),natrPhar1),halMar1),(haloWals1,haloVolc1))
-Public_phylo: (((((haloHalo1,haloSali1),haloUtah1),natrPhar1),halMar1),(haloWals1,haloVolc1))
+Multiz: HalophilesPriv haloWals1 natrPhar1 natrMaga1 haloHalo1 haloSali1 halMar1 haloUtah1
+Public_multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1 natrMaga1 haloTurk1 haloLacu1 haloMuko1
+Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga1),natrPhar1),halMar1),(haloWals1,haloVolc1))
+Public_phylo: ((((natrPhar1,((haloUtah1,(haloSali1,haloHalo1)),(haloMuko1,halMar1))),(haloTurk1,natrMaga1)),haloLacu1),haloWals1,haloVolc1)
Pub_id:
Rel_date: April 2007
Seq_src: Institute for Genomic Research
Sp_info: The genome is complete and being publicly released by Jonathan Eisen before journal publication while genome annotation is in progress. <I>H. volcanii</I> is a chemoorganotroph requiring complex nutrient medium and 1.5-2.5 M NaCl for growth. Cultures will grow at 37C, but optimal growth is at 42C.
@@ -176,11 +178,11 @@
Seq_size: 2847757 635786 437906 85092 6359
Seq_GC: 66.64 61.67 65.56 55.5 56.06
Gene_ct: 4135
Gb_acc: None
-Multiz: HalophilesPriv haloWals1 natrPhar1 natrMaga0 haloHalo1 haloSali1 halMar1 haloUtah1
+Multiz: HalophilesPriv haloWals1 natrPhar1 natrMaga1 haloHalo1 haloSali1 halMar1 haloUtah1
Public_multiz: Halophiles haloWals1 natrPhar1 haloHalo1 haloSali1 halMar1 haloUtah1
-Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga0),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
+Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga1),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
Public_phylo: (((((haloHalo1,haloSali1),haloUtah1),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
Pub_id:
Rel_date: 1 Oct 2009
Seq_src: Halolex
@@ -195,75 +197,75 @@
DB_name: haloUtah1
Name_chg: chr
Iso_pub: 10826803
Rel_date: April 2009
-Multiz: HalophilesPriv haloWals1 natrPhar1 natrMaga0 haloHalo1 haloSali1 haloVolc1_1 halMar1
-Public_multiz: Halophiles haloWals1 natrPhar1 haloHalo1 haloSali1 haloVolc1 halMar1
-Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga0),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
-Public_phylo: (((((haloHalo1,haloSali1),haloUtah1),natrPhar1),halMar1),(haloWals1,haloVolc1))
+Multiz: HalophilesPriv haloWals1 natrPhar1 natrMaga1 haloHalo1 haloSali1 haloVolc1_1 halMar1
+Public_multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1 natrMaga1 haloTurk1 haloLacu1 haloMuko1
+Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga1),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
+Public_phylo: ((((natrPhar1,((haloUtah1,(haloSali1,haloHalo1)),(haloMuko1,halMar1))),(haloTurk1,natrMaga1)),haloLacu1),haloWals1,haloVolc1)
Org_abr: Natr_phar
DB_name: natrPhar1
Iso_pub:
Rel_date: Oct 2005
Sp_info: <I>N. pharaonis</I> grows at high salt and pH and has multiple systems for nitrogen assimilation.
-Multiz: HalophilesPriv haloWals1 haloHalo1 natrMaga0 haloSali1 haloVolc1_1 halMar1 haloUtah1
-Public_multiz: Halophiles haloWals1 haloHalo1 haloSali1 haloVolc1 halMar1 haloUtah1
-Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga0),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
-Public_phylo: (((((haloHalo1,haloSali1),haloUtah1),natrPhar1),halMar1),(haloWals1,haloVolc1))
+Multiz: HalophilesPriv haloWals1 haloHalo1 natrMaga1 haloSali1 haloVolc1_1 halMar1 haloUtah1
+Public_multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1 natrMaga1 haloTurk1 haloLacu1 haloMuko1
+Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga1),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
+Public_phylo: ((((natrPhar1,((haloUtah1,(haloSali1,haloHalo1)),(haloMuko1,halMar1))),(haloTurk1,natrMaga1)),haloLacu1),haloWals1,haloVolc1)
Org_abr: Meth_jann
DB_name: methJann1
Iso_pub: http://www.springerlink.com/content/u8774k126821777x/
Name_chg: chr lg_extrachr sm_extrachr
TIGR_ID: 57
Rel_date: August 1996
Sp_info: The organism's genus was formerly <I>Methanococcus</I>, but it has been reclassified as <I>Methanocaldococcus</I>. <I>M. jannaschii</I> is a methanogen which grows optimally at 85C, and has the distinction of being the first archaeon and first hyperthermophile sequenced.
-Multiz: Methanococcus methFerv1 methVulc0 methInfe0 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1
-Phylo: (methKand1,(methTher1,(((methJann1,methFerv1),methVulc0),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
+Multiz: Methanococcus methFerv1 methVulc1 methInfe0 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1 methSp_FS406_1
+Phylo: (methKand1,(methTher1,(((methJann1,methFerv1),methVulc1),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
Org_abr: Meth_mari_S2
Menu_name: Methanococcus maripaludis S2
DB_name: metMar1
Rel_date: May 2004
Iso_pub: http://www.springerlink.com/content/nv3wj86641n40147/
Sp_info: <I>M. maripaludis S2</I> is a mesophilic methanogen which was isolated from salt marsh sediment in South Carolina. It grows on carbon dioxide and hydrogen, producing methane.
-Multiz: Methanococcus methMari_C5_1 methMari_C7 methVann1 methAeol1 methJann1
+Multiz: Methanococcus methMari_C5_1 methMari_C7 methVann1 methAeol1 methJann1 methSp_FS406_1
Phylo: (methKand1,(methTher1,(methJann1,(methAeol1,(methVann1,(methMari_C7,(methMari_C6,(metMar1,methMari_C5_1))))))))
Org_abr: Meth_mari_C5
DB_name: methMari_C5_1
Iso_pub:
-Multiz: Methanococcus metMar1 methMari_C6 methMari_C7 methVann1 methAeol1 methJann1
+Multiz: Methanococcus metMar1 methMari_C6 methMari_C7 methVann1 methAeol1 methJann1 methSp_FS406_1
Phylo: (methTher1,(methJann1,(methAeol1,(methVann1,(methMari_C7,(methMari_C6,(metMar1,methMari_C5_1)))))))
Org_abr: Meth_mari_C6
DB_name: methMari_C6
Iso_pub:
-Multiz: Methanococcus metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methJann1
+Multiz: Methanococcus metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methJann1 methSp_FS406_1
Phylo: (methTher1,(methJann1,(methAeol1,(methVann1,(methMari_C7,(methMari_C6,(metMar1,methMari_C5_1)))))))
Rel_date: Nov 2007
Org_abr: Meth_mari_C7
DB_name: methMari_C7
Iso_pub:
-Multiz: Methanococcus metMar1 methMari_C5_1 methMari_C6 methVann1 methAeol1 methJann1
+Multiz: Methanococcus metMar1 methMari_C5_1 methMari_C6 methVann1 methAeol1 methJann1 methSp_FS406_1
Phylo: (methTher1,(methJann1,(methAeol1,(methVann1,(methMari_C7,(methMari_C6,(metMar1,methMari_C5_1)))))))
Org_abr: Meth_aeol_Nankai-3
Menu_name: Methanococcus aeolicus
Iso_pub: 16825624
DB_name: methAeol1
SP_ID: METAO METMP
-Multiz: Methanococcus metMar1 methMari_C5_1 methMari_C6 methMari_C7 methVann1 methJann1
+Multiz: Methanococcus metMar1 methMari_C5_1 methMari_C6 methMari_C7 methVann1 methJann1 methSp_FS406_1
Phylo: (methTher1,(methJann1,(methAeol1,(methVann1,(methMari_C7,(methMari_C6,(metMar1,methMari_C5_1)))))))
Org_abr: Meth_vann_SB
Menu_name: Methanococcus vannielii SB
Iso_pub: 14888644
DB_name: methVann1
SP_ID: METVA METMP
-Multiz: Methanococcus metMar1 methMari_C5_1 methMari_C6 methMari_C7 methAeol1 methJann1
+Multiz: Methanococcus metMar1 methMari_C5_1 methMari_C6 methMari_C7 methAeol1 methJann1 methSp_FS406_1
Phylo: (methTher1,(methJann1,(methAeol1,(methVann1,(methMari_C7,(methMari_C6,(metMar1,methMari_C5_1)))))))
Org_abr: Meth_ferv_AG86
Menu_name: Methanocaldococcus fervens
@@ -273,10 +275,10 @@
SP_ID: METJA
Rel_date: July 2009
Name_chg: chr pMEFER01
Seq_src: Joint Genome Institute
-Multiz: Methanococcus methJann1 methVulc0 methInfe0 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1
-Phylo: (methKand1,(methTher1,(((methJann1,methFerv1),methVulc0),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
+Multiz: Methanococcus methJann1 methVulc1 methInfe0 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1 methSp_FS406_1
+Phylo: (methKand1,(methTher1,(((methJann1,methFerv1),methVulc1),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
Org_abr: Meth_infe_ME
Menu_name: Methanocaldococcus infernus
DB_name: methInfe0
@@ -285,33 +287,11 @@
SP_ID: METJA
Rel_date: July 2009
Name_chg: ctg00065 ctg00004 ctg00020 ctg00072 ctg00034 ctg00022 ctg00031 ctg00044 ctg00045 ctg00063 ctg00039 ctg00103 ctg00043 ctg00019 ctg00040 ctg00051 ctg00026 ctg00037 ctg00018 ctg00010 ctg00085 ctg00032 ctg00028 ctg00021 ctg00049 ctg00052 ctg00042 ctg00095 ctg00038 ctg00033 ctg00081 ctg00070 ctg00113 ctg00016 ctg00002 ctg00069 ctg00024 ctg00027 ctg00108 ctg00017 ctg00107 ctg00062 ctg00036 ctg00029 ctg00035 ctg00041 ctg00023 ctg00009 ctg00047 ctg00082 ctg00025 ctg00046 ctg00030 ctg00059
Seq_src: Joint Genome Institute
-Multiz: Methanococcus methJann1 methFerv1 methVulc0 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1
-Phylo: (methKand1,(methTher1,(((methJann1,methFerv1),methVulc0),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
+Multiz: Methanococcus methJann1 methFerv1 methVulc1 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1 methSp_FS406_1
+Phylo: (methKand1,(methTher1,(((methJann1,methFerv1),methVulc1),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
-Org_abr: Meth_vulc_M7
-Org_name: Methanocaldococcus vulcanius M7
-Menu_name: Methanocaldococcus vulcanius
-Domain: Archaea
-DB_name: methVulc0
-Iso_pub: 10319479
-Rel_date: July 2009
-DB_src: ORNL
-Tax_name: Methanocaldococcus vulcanius M7
-BLAT_IDs: 61019 61020
-Tax_ID: 579137: Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.
-TIGR_ID: 0
-SP_ID: METJA
-Dom_ct: &Meth_infe_ME
-Gen_ID: 0
-Seq_acc: Meth-vulcM7-draft0609 Contig4 Contig6 Contig7 Contig2 Contig3 Contig5
-Name_chg: Contig4 Contig6 Contig7 Contig2 Contig3 Contig5
-Seq_size: 729534 713986 110152 104703 44189 38809
-Seq_GC: 31.48 31.26 31.57 32.04 30.53 31.97
-Seq_src: Joint Genome Institute
-Multiz: Methanococcus methJann1 methFerv1 methInfe0 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1
-Phylo: (methKand1,(methTher1,(((methJann1,methFerv1),methVulc0),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
Org_abr: Meth_acet
DB_name: metAce1
Rel_date: April 2002
@@ -672,72 +652,59 @@
Rel_date: 09/17/2005
Multiz: Vibrio vibrChol1 vibrChol_MO10_1 vibrVuln_CMCP6_1 vibrVuln_YJ016_1 vibrPara1 vibrFisc_ES114_1
Phylo: (((((vibrChol1,vibrChol_O395_1),vibrChol_MO10_1),(vibrVuln_CMCP6_1,vibrVuln_YJ016_1)),vibrPara1),vibrFisc_ES114_1)
-Org_abr: Geob_lovl_SZ
-Menu_name: Geobacter lovleyi
-DB_name: geobLovl0
-Tax_name: Geobacter lovleyi SZ
-Rel_date: Dec 2006
-Seq_src: US DOE Joint Genome Institute
-Multiz: Geobacters geobMeta_GS15 geobSulf geobUran_RF4 geobSp_FRC32_0 geobBemi0 peloProp_DSM2379 peloCarb
-Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobSp_FRC32_0)),geobBemi0),peloProp_DSM2379),geobLovl0),peloCarb)
-
Org_abr: Geob_meta_GS-15
Org_name: Geobacter metallireducens GS-15
Menu_name: Geobacter metallireducens
Seq_acc: NC_007515 NC_007517
Name_chg: plasmid chr
DB_name: geobMeta_GS15
-Multiz: Geobacters geobSulf geobUran_RF4 geobSp_FRC32_0 geobBemi0 geobLovl0 peloProp_DSM2379 peloCarb
-Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobSp_FRC32_0)),geobBemi0),peloProp_DSM2379),geobLovl0),peloCarb)
+Multiz: Geobacters geobSulf geobUran_RF4 geobFRC_32 geobBemi_BEM geobLovl_SZ peloProp_DSM2379 peloCarb
+Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobFRC_32)),geobBemi_BEM),peloProp_DSM2379),geobLovl_SZ),peloCarb)
Org_abr: Geob_sulf
DB_name: geobSulf
-Multiz: Geobacters geobMeta_GS15 geobUran_RF4 geobSp_FRC32_0 geobBemi0 geobLovl0 peloProp_DSM2379 peloCarb
-Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobSp_FRC32_0)),geobBemi0),peloProp_DSM2379),geobLovl0),peloCarb)
+Multiz: Geobacters geobMeta_GS15 geobUran_RF4 geobFRC_32 geobBemi_BEM geobLovl_SZ peloProp_DSM2379 peloCarb
+Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobFRC_32)),geobBemi_BEM),peloProp_DSM2379),geobLovl_SZ),peloCarb)
Org_abr: Geob_uran_Rf4
Menu_name: Geobacter uraniumreducens
DB_name: geobUran_RF4
Rel_date: 12/11/2007
-Multiz: Geobacters geobSp_FRC32_0 geobMeta_GS15 geobSulf geobBemi0 geobLovl0 peloProp_DSM2379 peloCarb
-Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobSp_FRC32_0)),geobBemi0),peloProp_DSM2379),geobLovl0),peloCarb)
+Multiz: Geobacters geobFRC_32 geobMeta_GS15 geobSulf geobBemi_BEM geobLovl_SZ peloProp_DSM2379 peloCarb
+Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobFRC_32)),geobBemi_BEM),peloProp_DSM2379),geobLovl_SZ),peloCarb)
Org_abr: Geob_lovl_SZ
+SP_ID: GEOMG GEOSL GEOUR
Rel_date: Dec 2006
Seq_src: US DOE Joint Genome Institute
-Multiz: Geobacters geobMeta_GS15 geobSulf geobUran_RF4 geobSp_FRC32_0 geobBemi0 peloProp_DSM2379 peloCarb
-Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobSp_FRC32_0)),geobBemi0),peloProp_DSM2379),geobLovl_SZ),peloCarb)
+Multiz: Geobacters geobMeta_GS15 geobSulf geobUran_RF4 geobFRC_32 geobBemi_BEM peloProp_DSM2379 peloCarb
+Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobFRC_32)),geobBemi_BEM),peloProp_DSM2379),geobLovl_SZ),peloCarb)
-Org_abr: Geob_bemi
-DB_name: geobBemi0
-Tax_name: Geobacter bemidjiensis Bem
-Rel_date: Apr 2007
+Org_abr: Geob_bemi_Bem
+SP_ID: GEOMG GEOSL GEOUR
+Rel_date: Aug 2008
Seq_src: US DOE Joint Genome Institute
-Multiz: Geobacters geobMeta_GS15 geobSulf geobUran_RF4 geobSp_FRC32_0 geobLovl_SZ peloProp_DSM2379 peloCarb
-Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobSp_FRC32_0)),geobBemi0),peloProp_DSM2379),geobLovl_SZ),peloCarb)
+Multiz: Geobacters geobMeta_GS15 geobSulf geobUran_RF4 geobFRC_32 geobLovl_SZ peloProp_DSM2379 peloCarb
+Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobFRC_32)),geobBemi_BEM),peloProp_DSM2379),geobLovl_SZ),peloCarb)
-Org_abr: Geob_sp_FRC32
-DB_name: geobSp_FRC32_0
-Tax_name: Geobacter sp FRC32
-Rel_date: July 2007
+Org_abr: Geob_FRC_32
+SP_ID: GEOMG GEOSL GEOUR
+Rel_date: Jan 2009
Seq_src: US DOE Joint Genome Institute
-Seq_acc: NZ_AASH01000164 NZ_AASH01000163 NZ_AASH01000162 NZ_AASH01000161 NZ_AASH01000160 NZ_AASH01000159 NZ_AASH01000158 NZ_AASH01000157 NZ_AASH01000156 NZ_AASH01000155 NZ_AASH01000154 NZ_AASH01000153 NZ_AASH01000152 NZ_AASH01000151 NZ_AASH01000150 NZ_AASH01000149 NZ_AASH01000148 NZ_AASH01000147 NZ_AASH01000146 NZ_AASH01000145 NZ_AASH01000144 NZ_AASH01000143 NZ_AASH01000142 NZ_AASH01000141 NZ_AASH01000140 NZ_AASH01000139 NZ_AASH01000138 NZ_AASH01000137 NZ_AASH01000136 NZ_AASH01000135 NZ_AASH01000134 NZ_AASH01000133 NZ_AASH01000132 NZ_AASH01000131 NZ_AASH01000130 NZ_AASH01000129 NZ_AASH01000128 NZ_AASH01000127 NZ_AASH01000126 NZ_AASH01000125 NZ_AASH01000124 NZ_AASH01000123 NZ_AASH01000122 NZ_AASH01000121 NZ_AASH01000120 NZ_AASH01000119 NZ_AASH01000118 NZ_AASH01000117 NZ_AASH01000116 NZ_AASH01000115 NZ_AASH01000114 NZ_AASH01000113 NZ_AASH01000112 NZ_AASH01000111 NZ_AASH01000110 NZ_AASH01000109 NZ_AASH01000108 NZ_AASH01000107 NZ_AASH01000106 NZ_AASH01000105 NZ_AASH01000104 NZ_AASH01000103 NZ_AASH01000102 NZ_AASH01000101 NZ_AASH01000100 NZ_AASH01000099 NZ_AASH01000098 NZ_AASH01000097 NZ_AASH01000096 NZ_AASH01000095 NZ_AASH01000094 NZ_AASH01000093 NZ_AASH01000092 NZ_AASH01000091 NZ_AASH01000090 NZ_AASH01000089 NZ_AASH01000088 NZ_AASH01000087 NZ_AASH01000086 NZ_AASH01000085 NZ_AASH01000084 NZ_AASH01000083 NZ_AASH01000082 NZ_AASH01000081 NZ_AASH01000080 NZ_AASH01000079 NZ_AASH01000078 NZ_AASH01000077 NZ_AASH01000076 NZ_AASH01000075 NZ_AASH01000074 NZ_AASH01000073 NZ_AASH01000072 NZ_AASH01000071 NZ_AASH01000070 NZ_AASH01000069 NZ_AASH01000068 NZ_AASH01000067 NZ_AASH01000066 NZ_AASH01000065 NZ_AASH01000064 NZ_AASH01000063 NZ_AASH01000062 NZ_AASH01000061 NZ_AASH01000060 NZ_AASH01000059 NZ_AASH01000058 NZ_AASH01000057 NZ_AASH01000056 NZ_AASH01000055 NZ_AASH01000054 NZ_AASH01000053 NZ_AASH01000052 NZ_AASH01000051 NZ_AASH01000050 NZ_AASH01000049 NZ_AASH01000048 NZ_AASH01000047 NZ_AASH01000046 NZ_AASH01000045 NZ_AASH01000044 NZ_AASH01000043 NZ_AASH01000042 NZ_AASH01000041 NZ_AASH01000040 NZ_AASH01000039 NZ_AASH01000038 NZ_AASH01000037 NZ_AASH01000036 NZ_AASH01000035 NZ_AASH01000034 NZ_AASH01000033 NZ_AASH01000032 NZ_AASH01000031 NZ_AASH01000030 NZ_AASH01000029 NZ_AASH01000028 NZ_AASH01000027 NZ_AASH01000026 NZ_AASH01000025 NZ_AASH01000024 NZ_AASH01000023 NZ_AASH01000022 NZ_AASH01000021 NZ_AASH01000020 NZ_AASH01000019 NZ_AASH01000018 NZ_AASH01000017 NZ_AASH01000016 NZ_AASH01000015 NZ_AASH01000014 NZ_AASH01000013 NZ_AASH01000012 NZ_AASH01000011 NZ_AASH01000010 NZ_AASH01000009 NZ_AASH01000008 NZ_AASH01000007 NZ_AASH01000006 NZ_AASH01000005 NZ_AASH01000004 NZ_AASH01000003 NZ_AASH01000002 NZ_AASH01000001
-Name_chg: Ctg94 Ctg91 Ctg108 Ctg115 Ctg103 Ctg93 Ctg97 Ctg89 Ctg87 Ctg106 Ctg98 Ctg114 Ctg113 Ctg105 Ctg107 Ctg92 Ctg104 Ctg100 Ctg117 Ctg120 Ctg121 Ctg96 Ctg122 Ctg102 Ctg116 Ctg101 Ctg99 Ctg123 Ctg109 Ctg131 Ctg136 Ctg110 Ctg118 Ctg95 Ctg129 Ctg112 Ctg125 Ctg124 Ctg127 Ctg140 Ctg134 Ctg128 Ctg132 Ctg119 Ctg111 Ctg126 Ctg137 Ctg147 Ctg130 Ctg144 Ctg149 Ctg142 Ctg138 Ctg135 Ctg139 Ctg141 Ctg150 Ctg133 Ctg143 Ctg145 Ctg154 Ctg155 Ctg146 Ctg158 Ctg151 Ctg164 Ctg157 Ctg161 Ctg152 Ctg148 Ctg159 Ctg153 Ctg163 Ctg165 Ctg173 Ctg162 Ctg156 Ctg168 Ctg167 Ctg176 Ctg160 Ctg185 Ctg171 Ctg166 Ctg174 Ctg172 Ctg177 Ctg169 Ctg179 Ctg170 Ctg191 Ctg193 Ctg181 Ctg194 Ctg184 Ctg175 Ctg178 Ctg195 Ctg187 Ctg189 Ctg190 Ctg182 Ctg192 Ctg180 Ctg196 Ctg201 Ctg210 Ctg183 Ctg208 Ctg197 Ctg205 Ctg213 Ctg200 Ctg199 Ctg198 Ctg214 Ctg216 Ctg207 Ctg188 Ctg186 Ctg212 Ctg206 Ctg209 Ctg218 Ctg219 Ctg215 Ctg203 Ctg211 Ctg202 Ctg204 Ctg220 Ctg217 Ctg223 Ctg221 Ctg232 Ctg226 Ctg222 Ctg224 Ctg231 Ctg235 Ctg233 Ctg228 Ctg225 Ctg227 Ctg229 Ctg236 Ctg230 Ctg234 Ctg239 Ctg240 Ctg238 Ctg237 Ctg243 Ctg241 Ctg244 Ctg246 Ctg247 Ctg242 Ctg245 Ctg248 Ctg250 Ctg249 Ctg251 Ctg252
-Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobSp_FRC32_0)),geobBemi0),peloProp_DSM2379),geobLovl_SZ),peloCarb)
-Multiz: Geobacters geobUran_RF4 geobMeta_GS15 geobSulf geobBemi0 geobLovl_SZ peloProp_DSM2379 peloCarb
-Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobSp_FRC32_0)),geobBemi0),peloProp_DSM2379),geobLovl_SZ),peloCarb)
+Multiz: Geobacters geobUran_RF4 geobMeta_GS15 geobSulf geobBemi_BEM geobLovl_SZ peloProp_DSM2379 peloCarb
+Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobFRC_32)),geobBemi_BEM),peloProp_DSM2379),geobLovl_SZ),peloCarb)
Org_abr: Pelo_carb
-Multiz: Geobacters geobUran_RF4 geobMeta_GS15 geobSulf geobSp_FRC32_0 geobBemi0 geobLovl_SZ peloProp_DSM2379
-Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobSp_FRC32_0)),geobBemi0),peloProp_DSM2379),geobLovl_SZ),peloCarb)
+Multiz: Geobacters geobUran_RF4 geobMeta_GS15 geobSulf geobFRC_32 geobBemi_BEM geobLovl_SZ peloProp_DSM2379
+Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobFRC_32)),geobBemi_BEM),peloProp_DSM2379),geobLovl_SZ),peloCarb)
Org_abr: Pelo_prop_DSM_2379
Menu_name: Pelobacter propionicus
DB_name: peloProp_DSM2379
-Multiz: Geobacters geobMeta_GS15 geobSulf geobUran_RF4 geobSp_FRC32_0 geobBemi0 geobLovl_SZ peloCarb
-Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobSp_FRC32_0)),geobBemi0),peloProp_DSM2379),geobLovl_SZ),peloCarb)
+Multiz: Geobacters geobMeta_GS15 geobSulf geobUran_RF4 geobFRC_32 geobBemi_BEM geobLovl_SZ peloCarb
+Phylo: ((((((geobMeta_GS15,geobSulf), (geobUran_RF4, geobFRC_32)),geobBemi_BEM),peloProp_DSM2379),geobLovl_SZ),peloCarb)
Org_abr: Croc_wats_WH8501
DB_name: crocWats_WH8501_0
Tax_name: Crocosphaera watsonii WH 8501
@@ -979,38 +946,9 @@
Seq_src: JGI
Trna_opt: -o# -f# -m# -F# -HyA
Trna_abr: Vulc_dist-tRNAs
-Org_abr: Natr_maga
-Org_name: Natrialba magadii
-Menu_name: Natrialba magadii
-Iso_pub: 9226918
-Domain: Archaea
-DB_name: natrMaga0
-DB_src: ORNL
-Tax_name: Natrialba magadii ATCC 43099
-BLAT_IDs: 61008 61009
-Tax_ID: 547559: Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natrialba.
-TIGR_ID: 0
-SP_ID: HALSA HALSP NATPD HALMA HALWD HALVO HALSQ
-Dom_ct: &Meth_hung_JF-1
-Gen_ID: 0
-Seq_acc: Nmag-assembly-04-2009 Contig75 Contig74 Contig73
-Name_chg: Contig75 Contig74 Contig73
-Seq_size: 4128710 254969 58508
-Seq_GC: 61.30 56.82 61.91
-#Seq_acc: Nmag-assembly-04-2009 Contig75 Contig74 Contig73 Contig1 Contig2 Contig3 Contig4 Contig5 Contig6 Contig7 Contig8 Contig9 Contig10 Contig11 Contig12 Contig13 Contig14 Contig15 Contig16 Contig17 Contig18 Contig19 Contig20 Contig21 Contig22 Contig23 Contig24 Contig25 Contig26 Contig27 Contig28 Contig29 Contig30 Contig31 Contig32 Contig33 Contig34 Contig35 Contig36 Contig37 Contig38 Contig39 Contig40 Contig41 Contig42 Contig43 Contig44 Contig45 Contig46 Contig47 Contig48 Contig49 Contig50 Contig51 Contig52 Contig53 Contig54 Contig55 Contig56 Contig57 Contig58 Contig59 Contig60 Contig61 Contig62 Contig63 Contig64 Contig65 Contig66 Contig67 Contig68 Contig69 Contig70 Contig71 Contig72
-#Name_chg: Contig75 Contig74 Contig73 Contig1 Contig2 Contig3 Contig4 Contig5 Contig6 Contig7 Contig8 Contig9 Contig10 Contig11 Contig12 Contig13 Contig14 Contig15 Contig16 Contig17 Contig18 Contig19 Contig20 Contig21 Contig22 Contig23 Contig24 Contig25 Contig26 Contig27 Contig28 Contig29 Contig30 Contig31 Contig32 Contig33 Contig34 Contig35 Contig36 Contig37 Contig38 Contig39 Contig40 Contig41 Contig42 Contig43 Contig44 Contig45 Contig46 Contig47 Contig48 Contig49 Contig50 Contig51 Contig52 Contig53 Contig54 Contig55 Contig56 Contig57 Contig58 Contig59 Contig60 Contig61 Contig62 Contig63 Contig64 Contig65 Contig66 Contig67 Contig68 Contig69 Contig70 Contig71 Contig72
-#Seq_size: 4128710 254969 58508 983 869 1014 924 921 989 977 924 952 927 1398 1347 1265 935 1002 932 985 929 880 976 924 914 958 942 620 1013 865 961 554 997 938 900 905 947 976 611 766 965 759 969 924 920 985 865 951 938 925 960 893 922 854 997 935 1072 708 1288 1548 1514 1712 1239 1715 1400 1777 1675 1644 1935 1467 1992 2000 1381 1075 2013
-#Seq_GC: 61.30 56.82 61.91 61.44 60.53 64.2 61.58 58.52 41.35 62.74 61.47 63.13 60.73 61.3 58.28 63.64 59.68 57.58 53.97 65.58 61.79 58.18 56.45 61.26 62.47 58.98 60.51 55.48 54.89 62.89 55.98 65.52 59.68 61.3 64.11 60.55 67.05 48.77 68.41 65.4 56.48 60.34 57.79 59.96 54.24 60.51 59.88 62.04 61.62 64.22 60.73 63.38 56.4 54.68 61.08 62.99 63.15 61.44 62.66 61.5 64.66 73.89 61.99 59.48 59.21 61.11 62.69 61.74 61.65 64.21 61.14 54.75 60.32 63.07 63.54
-Gene_ct: 0
-Pub_id:
-Rel_date: Private
-Seq_src: Joint Genome Institute
-Trna_opt: -o# -f# -m# -F# -HyA
-Trna_abr: Natr_maga-tRNAs
-Multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1
-Phylo: (((((haloHalo1,haloSali1),natrMaga0),natrPhar1),halMar1),haloUtah1),(haloWals1,haloVolc1))
+
Org_abr: Carb_hydr_Z-2901
Org_name: Carboxydothermus hydrogenoformans Z-2901
Menu_name: Carboxydothermus hydrogenoformans
@@ -1855,4 +1793,167 @@
DB_name: desuAuda
Rel_date: July 2008
Multiz: Peptococcaceae peloTher_SI carbHydrZ2901 desuRedu_MI_1
Phylo: ((desuAuda,(peloTher_SI,carbHydrZ2901)), desuRedu_MI_1)
+
+Org_abr: Acid_boon_T469_uid43333
+DB_name: acidBoon1
+Menu_name: Aciduliprofundum boonei T469
+Name_chg: chr
+Seq_src: DOE/JGI
+Rel_date: Feb 2010
+Iso_pub: 16871216
+SP_ID: 9EURY
+
+Org_abr: Meth_FS40_22_uid42499
+Menu_name: Methanocaldococcus FS406 22
+DB_name: methSp_FS406_1
+Seq_src: DOE/JGI
+Name_chg: chr plasmid_pFS01
+Seq_acc: NC_013887 NC_013888
+Rel_date: Feb 2010
+Multiz: Methanococcus methFerv1 methVulc1 methInfe0 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1
+Phylo: (methKand1,(methTher1,((((methJann1, methSp_FS406_1),methFerv1),methVulc1),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
+
+Org_abr: Meth_vulc_M7
+Menu_name: Methanocaldococcus vulcanius M7
+DB_name: methVulc1
+Seq_acc: NC_013407 NC_013408 NC_013409
+Name_chg: chr plasmid_pMETVU01 plasmid_pMETVU02
+Seq_src: DOE/JGI
+Rel_date: Dec 2009
+SP_ID: METVM
+Iso_pub: 10319479
+Multiz: Methanococcus methJann1 methFerv1 methInfe0 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1 methSp_FS406_1
+Phylo: (methKand1,(methTher1,((((methJann1, methSp_FS406_1),methFerv1),methVulc1),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
+
+Org_abr: Natr_maga_ATCC_43099_uid46245
+DB_name: natrMaga1
+Menu_name: Natrialba magadii ATCC 43099
+Seq_acc: NC_013922 NC_013923 NC_013924 NC_013925
+Name_chg: chr plasmid_pNMAG01 plasmid_pNMAG02 plasmid_pNMAG03
+Seq_src: DOE/JGI
+Rel_date: Feb 2010
+Iso_pub: 9226918
+SP_ID: NATMA
+Multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1 haloTurk1 haloLacu1 haloMuko1
+Phylo: ((((natrPhar1,((haloUtah1,(haloSali1,haloHalo1)),(haloMuko1,halMar1))),(haloTurk1,natrMaga1)),haloLacu1),haloWals1,haloVolc1)
+
+
+Org_abr: Ferr_plac_DSM_10642_uid40863
+Menu_name: Ferroglobus placidus DSM 10642
+DB_name: ferrPlac1
+Seq_acc: NC_013849
+Name_chg: chr
+Seq_src: DOE/JGI
+Rel_date: Feb 2010
+SP_ID: FERPL
+Iso_pub: 8929276
+Multiz: Archaeoglobaceae archProf1 archFulg1
+Phylo: ((archFulg1,archProf1),ferrPlac1)
+
+Org_abr: Meth_rumi_M1_uid45857
+Menu_name: Methanobrevibacter ruminantium M1
+DB_name: methRumi1
+Seq_acc: NC_013790
+Name_chg: chr
+Seq_src: Pastoral Greenhouse Gas Research Consortium
+Rel_date: Feb 2010
+Iso_pub: 13549377
+Pub_id: 20126622
+Multiz: Methanogens methSmit1 methTher1 metMar1 methMari_C5_1 methJann1 methRumi1
+Phylo: ((((methStad1,(methSmit1,methRumi1)),methTher1),(metMar1,methMari_C5_1)),methJann1)
+
+Org_abr: Sulf_isla_L_D_8_5_uid43679
+Menu_name: Sulfolobus islandicus L D 8 5
+DB_name: sulfIsla_L_D_8_5
+Seq_acc: NC_013769 NC_013770
+Name_chg: chr plasmid_pLD8501
+Seq_src: DOE/JGI
+Rel_date: Feb 2010
+SP_ID SULIS
+Multiz: Sulfolobes sulfIsla_Y_N_15_51 sulfIsla_Y_G_57_14 sulfIsla_M_16_27 sulfIsla_M_14_25 sulfIsla_M_16_4 sulfIsla_L_D_8_5 sulSol1 sulfAcid1 sulfToko1 metaSedu
+Phylo: (metaSedu,((sulSol1,((sulfIsla_M_16_4,(sulfIsla_M_14_25,sulfIsla_M_16_27)),((sulfIsla_Y_G_57_14,sulfIsla_Y_N_15_51),(sulfIsla_L_S_2_15,sulfIsla_L_D_8_5)))),(sulfAcid1,sulfToko1)))
+
+Org_abr: Arch_prof_DSM_5631_uid43493
+Menu_name: Archaeoglobus profundus DSM 5631
+DB_name: archProf1
+SP_ID: ARCPR
+Seq_acc: NC_013741 NC_013742
+Name_chg: chr plasmid_pArcpr01
+Seq_src: DOE/JGI
+Rel_date: Jan 2010
+Multiz: Archaeoglobaceae ferrPlac1 archProf1 archFulg1
+Phylo: ((archFulg1,archProf1),ferrPlac1)
+SP_ID: ARCPR
+
+Org_abr: Halo_turk_DSM_5511_uid43501
+Menu_name: Haloterrigena turkmenica DSM 5511
+DB_name: haloTurk1
+Seq_acc: NC_013743 NC_013744 NC_013745 NC_013746 NC_013747 NC_013748 NC_013749
+Name_chg: chr plasmid_pHTUR01 plasmid_pHTUR02 plasmid_pHTUR03 plasmid_pHTUR04 plasmid_pHTUR05 plasmid_pHTUR06
+Seq_src: DOE/JGI
+Rel_date: Jan 2010
+Multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1 natrMaga1 haloTurk1 haloLacu1 haloMuko1
+Phylo: ((((natrPhar1,((haloUtah1,(haloSali1,haloHalo1)),(haloMuko1,halMar1))),(haloTurk1,natrMaga1)),haloLacu1),haloWals1,haloVolc1)
+
+
+
+
+Org_abr: Meth_palu_SANAE
+Menu_name: Methanocella paludicola SANAE
+DB_name: methPalud1
+Seq_acc: NC_013665
+Name_chg: chr
+Seq_src: NITE
+Rel_date: Dec 2009
+SP_ID: METPS
+Iso_pub: 18398197
+
+Org_abr: Halo_muko_DSM_12286
+Menu_name: Halomicrobium mukohataei DSM 12286
+DB_name: haloMuko1
+Seq_acc: NC_013202 NC_013201
+Name_chg: chr plasmid_pHmuk01
+Gb_acc: CP001688 CP001689
+Seq_size: 3110487 221862
+Gene_ct: 3277 198
+Seq_GC: 65.63 64.15
+Seq_src: DOE/JGI
+Rel_date: Sept 2009
+SP_ID: HALMD
+Iso_pub: 8995805
+Multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1 natrMaga1 haloTurk1 haloLacu1 haloMuko1
+Phylo: ((((natrPhar1,((haloUtah1,(haloSali1,haloHalo1)),(haloMuko1,halMar1))),(haloTurk1,natrMaga1)),haloLacu1),haloWals1,haloVolc1)
+
+
+
+Org_abr: Halo_lacu_ATCC_49239
+Menu_name: Halorubrum lacusprofundi ATCC 49239
+DB_name: haloLacu1
+Seq_acc: NC_012029 NC_012028 NC_012030
+Name_chg: chr1 chr2 plasmid_pHLAC01
+Gb_acc: CP001365 CP001366 CP001367
+Seq_size: 2735295 525943 431338
+Gene_ct: 2802 522 402
+Seq_GC: 66.72 57.14 54.86
+Seq_src: DOE/JGI
+Rel_date: Feb 2009
+SP_ID: HALLT
+Multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1 natrMaga1 haloTurk1 haloLacu1 haloMuko1
+Phylo: ((((natrPhar1,((haloUtah1,(haloSali1,haloHalo1)),(haloMuko1,halMar1))),(haloTurk1,natrMaga1)),haloLacu1),haloWals1,haloVolc1)
+
+
+
+Org_abr: Cand_Meth_palustris_E1_9c
+Menu_name: Methanosphaerula palustris E1 9c
+DB_name: methPalus1
+Seq_acc: NC_011832
+Name_chg: chr
+Seq_src: DOE/JGI
+Rel_date: Sept 2009
+SP_ID: METPE
+Iso_pub: 19406770
+
+
+# haloHalo1 haloSali1 natrPhar1 halMar1 haloUtah1 haloWals1 haloVolc1 natrMaga1 haloTurk1 haloLacu1 haloMuko1
+# ((((natrPhar1,((haloUtah1,(haloSali1,haloHalo1)),(haloMuko1,halMar1))),(haloTurk1,natrMaga1)),haloLacu1),haloWals1,haloVolc1)
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