src/hg/blastToPsl/pslBuild.h 1.2
1.2 2010/04/16 17:32:12 markd
add options to convert TBLASTN to codon nucleotide/nucleotide coordinates, fixed bug with tStart/tEnd extending beyond actual range
Index: src/hg/blastToPsl/pslBuild.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/blastToPsl/pslBuild.h,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 4 -r1.1 -r1.2
--- src/hg/blastToPsl/pslBuild.h 8 Feb 2010 03:04:24 -0000 1.1
+++ src/hg/blastToPsl/pslBuild.h 16 Apr 2010 17:32:12 -0000 1.2
@@ -4,15 +4,16 @@
enum
/* flags for build, including blast algorithm */
{
- blastn = 0x01, // blast algorithms
- blastp = 0x02,
- blastx = 0x04,
- tblastn = 0x10,
- tblastx = 0x20,
- psiblast = 0x40,
- bldPslx = 0x80, // construct a PSLx with sequence
+ blastn = 0x001, // blast algorithms
+ blastp = 0x002,
+ blastx = 0x004,
+ tblastn = 0x010,
+ tblastx = 0x020,
+ psiblast = 0x040,
+ bldPslx = 0x080, // construct a PSLx with sequence
+ cnvNucCoords = 0x100,
};
/* score file header */
extern char *pslBuildScoreHdr;