src/hg/makeDb/doc/ailMel1.txt 1.12

Index: src/hg/makeDb/doc/ailMel1.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/ailMel1.txt,v
retrieving revision 1.11
retrieving revision 1.12
diff -b -B -U 4 -r1.11 -r1.12
--- src/hg/makeDb/doc/ailMel1.txt	19 Apr 2010 17:03:05 -0000	1.11
+++ src/hg/makeDb/doc/ailMel1.txt	19 Apr 2010 17:03:46 -0000	1.12
@@ -577,30 +577,4 @@
 # blastHg18KG 1.627%, ensGene 1.284%, both 0.845%, cover 51.91%, enrich 40.42x
 
     rm -rf blastOut
 #end tblastn
-#############################################################################
-# N-SCAN gene predictions (nscanGene) - (2010-04-18 markd)
-
-/mblab.wustl.edu/predictions/taeGut1
-
-    # obtained NSCAN predictions from michael brent's group
-    # at WUSTL
-    cd /cluster/data/ailMel1/bed/nscan
-    wget -nv http://mblab.wustl.edu/predictions/pig/ailMel1/readme.txt
-    wget -nv http://mblab.wustl.edu/predictions/pig/ailMel1/ailMel1.fa
-    wget -nv http://mblab.wustl.edu/predictions/pig/ailMel1/ailMel1.gtf
-    gzip ailMel1.*
-    chmod a-w *
-
-    # load track
-    gtfToGenePred -genePredExt ailMel1.gtf.gz stdout | hgLoadGenePred -genePredExt ailMel1 nscanGene stdin
-    hgPepPred ailMel1 generic nscanPep ailMel1.fa.gz
-    rm *.tab
-
-    # pig/ailMel1/trackDb.ra, add:
-    track nscanGene override
-    informant Pig N-SCAN uses human (hg19) as the informant, updated with PASA clusters of pig cDNAs.
-
-    # veryify top-level search spec, should produce no results:
-    hgsql -Ne 'select name from nscanGene' ailMel1 | egrep -v '^chr[0-9a-zA-Z_]+\.([0-9]+|pasa)((\.[0-9a-z]+)?\.[0-9a-z]+)?$' |head
-############################################################################