src/hg/makeDb/doc/ce6.txt 1.19

Index: src/hg/makeDb/doc/ce6.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/ce6.txt,v
retrieving revision 1.18
retrieving revision 1.19
diff -b -B -U 4 -r1.18 -r1.19
--- src/hg/makeDb/doc/ce6.txt	19 Jan 2010 20:14:21 -0000	1.18
+++ src/hg/makeDb/doc/ce6.txt	15 Apr 2010 18:03:15 -0000	1.19
@@ -2804,5 +2804,20 @@
             | hgLoadBed -noNameIx ce6 algBindSites stdin
 zcat all_L3_L4.L3_L4.ce6.ingenes.both_strands.reannotated.BED.gz \
     | grep -v track | awk -F'\t' '{printf "%s %d %d %s 0 %s\n", $1, $2, $3, $4, $6}' | hgLoadBed -noNameIx ce6 algBindGenic stdin
 
+############################################################################
+# CE6->CE4 LIFTOVER (working - 2010-04-15 - chin)
+
+    mkdir /hive/data/genomes/ce6/bed/blat.ce4.2010-04-15
+    cd /hive/data/genomes/ce6/bed/blat.ce4.2010-04-15
+    # -debug run to create run dir, preview scripts...
+    doSameSpeciesLiftOver.pl -debug -ooc /scratch/data/ce6/11.ooc \
+       ce6 ce4
+    # Real run:
+    time nice -n +19 doSameSpeciesLiftOver.pl -verbose=2 \
+         -ooc /scratch/data/ce6/11.ooc \
+        -bigClusterHub=pk -dbHost=hgwdev -workhorse=hgwdev \
+         ce6 ce4 > do.log 2>&1 &
+    #   real    6m22.653s
+
 #########################################################################