src/hg/utils/automation/makeDownloads.pl 1.26
1.26 2010/04/16 20:58:58 angie
Change example file in liftOver/README.txt to be ToHg19 (was ToHg18).
Index: src/hg/utils/automation/makeDownloads.pl
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/utils/automation/makeDownloads.pl,v
retrieving revision 1.25
retrieving revision 1.26
diff -b -B -U 4 -r1.25 -r1.26
--- src/hg/utils/automation/makeDownloads.pl 6 Apr 2010 18:39:53 -0000 1.25
+++ src/hg/utils/automation/makeDownloads.pl 16 Apr 2010 20:58:58 -0000 1.26
@@ -916,20 +916,20 @@
Alternate methods to ftp access.
Using an rsync command to download the entire directory:
rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/$db/liftOver/ .
-For a single file, e.g. ${db}ToHg18.over.chain.gz
+For a single file, e.g. ${db}ToHg19.over.chain.gz
rsync -avzP \
- rsync://hgdownload.cse.ucsc.edu/goldenPath/$db/liftOver/${db}ToHg18.over.chain.gz .
- (Hg18 is merely an example here, not necessarily existing.)
+ rsync://hgdownload.cse.ucsc.edu/goldenPath/$db/liftOver/${db}ToHg19.over.chain.gz .
+ (Hg19 is merely an example here, not necessarily existing.)
Or with wget, all files:
wget --timestamping \
'ftp://hgdownload.cse.ucsc.edu/goldenPath/$db/liftOver/*'
With wget, a single file:
wget --timestamping \
- 'ftp://hgdownload.cse.ucsc.edu/goldenPath/$db/liftOver/${db}ToHg18.over.chain.gz' \
- -O ${db}ToHg18.over.chain.gz
+ 'ftp://hgdownload.cse.ucsc.edu/goldenPath/$db/liftOver/${db}ToHg19.over.chain.gz' \
+ -O ${db}ToHg19.over.chain.gz
To uncompress the *.chain.gz files:
gunzip <file>.chain.gz
The liftOver utility can read the files in their .gz format,