src/hg/hgTables/gffOut.c 1.22

1.22 2010/04/15 04:57:53 markd
forgot to use parameter that was added to get either GTF or GTF (per Hiram)

Index: src/hg/hgTables/gffOut.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgTables/gffOut.c,v
retrieving revision 1.21
retrieving revision 1.22
diff -b -B -U 4 -r1.21 -r1.22
--- src/hg/hgTables/gffOut.c	9 Apr 2010 18:41:17 -0000	1.21
+++ src/hg/hgTables/gffOut.c	15 Apr 2010 04:57:53 -0000	1.22
@@ -243,9 +243,8 @@
 struct bed *bedList;
 struct gffLine *gffList, *gffPtr;
 char source[HDB_MAX_TABLE_STRING];
 int itemCount;
-boolean gtf2StopCodons = TRUE;
 struct region *region, *regionList = getRegions();
 
 textOpen();
 
@@ -255,9 +254,9 @@
     {
     struct lm *lm = lmInit(64*1024);
     int fieldCount;
     bedList = cookedBedList(conn, table, region, lm, &fieldCount);
-    gffList = bedToGffLines(bedList, hti, fieldCount, source, gtf2StopCodons);
+    gffList = bedToGffLines(bedList, hti, fieldCount, source, outputGtf);
     bedList = NULL;
     lmCleanup(&lm);
     for (gffPtr = gffList;  gffPtr != NULL;  gffPtr = gffPtr->next)
 	{