Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.88
retrieving revision 1.89
diff -b -B -U 4 -r1.88 -r1.89
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra	30 Mar 2010 15:10:47 -0000	1.88
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra	8 Apr 2010 19:35:11 -0000	1.89
@@ -2489,8 +2489,59 @@
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign dasNov1 chainDasNov1
         html chainNet
 
+track chainNetSusScr2
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 475.3
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb susScr2
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainNetSusScr2Viewchain
+    shortLabel Chain
+    view chain
+    visibility pack
+    subTrack chainNetSusScr2
+    spectrum on
+
+        track chainSusScr2
+        subTrack chainNetSusScr2Viewchain
+        subGroups view=chain
+        shortLabel $o_Organism Chain
+        longLabel $o_Organism ($o_date) Chained Alignments
+        type chain susScr2
+        html chainNet
+
+    track chainNetSusScr2Viewnet
+    shortLabel Net
+    view net
+    visibility full
+    subTrack chainNetSusScr2
+
+        track netSusScr2
+        subTrack chainNetSusScr2Viewnet
+        subGroups view=net
+        shortLabel $o_Organism Net
+        longLabel $o_Organism ($o_date) Alignment Net
+        type netAlign susScr2 chainSusScr2
+        html chainNet
+
 track chainNetSusScr1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date), Chain and Net Alignments

