Index: src/hg/utils/automation/makeDownloads.pl
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/utils/automation/makeDownloads.pl,v
retrieving revision 1.24
retrieving revision 1.25
diff -b -B -U 4 -r1.24 -r1.25
--- src/hg/utils/automation/makeDownloads.pl	30 Jul 2009 22:34:07 -0000	1.24
+++ src/hg/utils/automation/makeDownloads.pl	6 Apr 2010 18:39:53 -0000	1.25
@@ -633,9 +633,11 @@
 
 Files included in this directory:
 
 $db.2bit - contains the complete $organism/$db genome sequence
-    in the 2bit file format.  The utility program, twoBitToFa (available
+    in the 2bit file format.  Repeats from RepeatMasker and Tandem Repeats
+    Finder (with period of 12 or less) are shown in lower case; non-repeating
+    sequence is shown in upper case.  The utility program, twoBitToFa (available
     from the kent src tree), can be used to extract .fa file(s) from
     this file.  A pre-compiled version of the command line tool can be
     found at:
         http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/
@@ -823,8 +825,12 @@
   print $fh <<_EOF_
 This directory contains the $assemblyDate assembly of the $organism genome
 ($db, $assemblyLabel) in one gzip-compressed FASTA file per chromosome.
 
+Repeats from RepeatMasker and Tandem Repeats Finder (with period
+of 12 or less) are shown in lower case; non-repeating sequence is
+shown in upper case.
+
 This assembly was produced by $sequencingCenter.
 For more information on the $organism genome, see the project website:
   $projectUrl
 

