src/utils/qa/qaThis.csh 1.2

Index: src/utils/qa/qaThis.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/qaThis.csh,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 4 -r1.1 -r1.2
--- src/utils/qa/qaThis.csh	9 Apr 2010 00:16:28 -0000	1.1
+++ src/utils/qa/qaThis.csh	9 Apr 2010 00:33:42 -0000	1.2
@@ -19,18 +19,13 @@
   echo " Runs basic QA scripts on your table(s)"
   echo
   echo "    usage:  database Tablename [c]"
   echo
-  echo "    c should run count per chrom" 
-  echo "    Creates files if given multiple tables!"
-  echo "    Runs countPerChrom last so if it gets scaffold-y"
-  echo "    Or you just don't care, you can just stop looking"
+  echo "    c runs count per chrom"                                         
   echo
-  echo "    If you happen to have ideas on how to make it simply not run"
-  echo "    When it's scaffolds versus actual chroms, let me know"                                        
+  echo "    Works if you provide a list of tables"
+  echo "    In that case, it creates db.tableName.qa files"
   echo
-  echo "    It should also work if you provide a list"
-  echo "    I make no promises though"
 
   exit
 else
   set db=$argv[1]
@@ -120,10 +115,10 @@
 # ------------------------------------------------
 # check if any values are off Chrom ends
 
 echo "*~*~*~*~*~*~*~*~*~*~*~*~*~*"
-echo "Check whether entries are off chroms:"
-checkOffend.csh $db $tables
+echo "Check for illegal genomic coordinates:"
+checkTableCoords $db -table=$tables
 
 #----------------------------------------------
 #Check indeces
 echo "*~*~*~*~*~*~*~*~*~*~*~*~*~*"