braney: changes by commit

branch to review (2010-04-06 to 2010-04-13) v229

• add K562 with frag size 20k to GisDnaPet
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.940 - lines changed: 16, context: html, text, full: html, text
• release1 of wgEncodeGisDnaPet
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeGisDnaPet.release1.notes.txt 1.1 - lines changed: 78, context: html, text, full: html, text
• changed a table name to look like the others
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.941 - lines changed: 2, context: html, text, full: html, text
• changed some file names so they're consistent with the others
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeGisDnaPet.release1.notes.txt 1.2 - lines changed: 10, context: html, text, full: html, text
• change H1hesc cytosol to H1hesc cell
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra 1.2 - lines changed: 4, context: html, text, full: html, text
• always check for mafFile in trackDb settings, and if present, use it.
  • src/hg/hgTables/maf.c 1.19 - lines changed: 10, context: html, text, full: html, text
• check for an error case that used to core dump
  • src/hg/lib/hgMaf.c 1.14 - lines changed: 2, context: html, text, full: html, text
• comment out Melissa's recent change. Need to revisit this after some discussion
  • src/hg/encode/encodeValidate/config/fields.ra 1.30 - lines changed: 8, context: html, text, full: html, text
• some tiny changes to long labels in GIS RNA-seq track
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.943 - lines changed: 2, context: html, text, full: html, text
• better notes from Krish
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeGisRnaSeq.release1.notes.txt 1.2 - lines changed: 33, context: html, text, full: html, text
• take out color for GisDnaPet K562 20k track
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.944 - lines changed: 1, context: html, text, full: html, text