kent: changes by file

branch to review (2010-04-06 to 2010-04-13) v229

• src/hg/hgTables/bedList.c
  • 1.72 lines changed: 25, context: html, text, full: html, text
    Improving BED output for makeItems.
• src/hg/hgTables/custom.c
  • 1.46 lines changed: 12, context: html, text, full: html, text
    Improving BED output for makeItems.
  • 1.45 lines changed: 1, context: html, text, full: html, text
    Making filter work for makeItems. Hmm, what a complex piece of code!
  • 1.44 lines changed: 24, context: html, text, full: html, text
    Making all fields output work with makeItems.
• src/hg/hgTables/filterFields.c
  • 1.81 lines changed: 16, context: html, text, full: html, text
    Making filter work for makeItems. Hmm, what a complex piece of code!
  • 1.80 lines changed: 91, context: html, text, full: html, text
    Some more progress in making makeItems tracks work in table browser. Selected fields output now works. Filter puts up UI, but filter is still ignored.
• src/hg/hgTables/hgTables.c
  • 1.192 lines changed: 6, context: html, text, full: html, text
    Making filter work for makeItems. Hmm, what a complex piece of code!
  • 1.191 lines changed: 10, context: html, text, full: html, text
    Making all fields output work with makeItems.
• src/hg/hgTables/hgTables.h
  • 1.143 lines changed: 3, context: html, text, full: html, text
    Improving BED output for makeItems.
  • 1.142 lines changed: 2, context: html, text, full: html, text
    Making filter work for makeItems. Hmm, what a complex piece of code!
  • 1.141 lines changed: 4, context: html, text, full: html, text
    Making all fields output work with makeItems.
• src/hg/hgTables/joining.c
  • 1.58 lines changed: 10, context: html, text, full: html, text
    Improving BED output for makeItems.
  • 1.57 lines changed: 14, context: html, text, full: html, text
    Making all fields output work with makeItems.
• src/hg/hgTables/schema.c
  • 1.63 lines changed: 2, context: html, text, full: html, text
    Some more progress in making makeItems tracks work in table browser. Selected fields output now works. Filter puts up UI, but filter is still ignored.
  • 1.62 lines changed: 28, context: html, text, full: html, text
    Starting to get makeItems custom tracks to work. Schema page is made now, though links in it don't work.
• src/hg/hgTracks/hgTracks.c
  • 1.1641 lines changed: 36, context: html, text, full: html, text
    Taking a few more steps towards making the makeItems type custom track. It actually seems to be storing ranges in the customTrash database and displaying them now based on your javascript selections!
  • 1.1640 lines changed: 7, context: html, text, full: html, text
    Starting to get makeItems to work as a custom track type.
  • 1.1639 lines changed: 9, context: html, text, full: html, text
    Starting to implement more of the makeItems track javascript/C interface.
  • 1.1638 lines changed: 18, context: html, text, full: html, text
    Making it so that list of makeItems tracks to initialize is determined at run time. Making hgTracks.c generate a javascript function hgTrackInitTracks() that gets called during the javascript init.
  • 1.1637 lines changed: 23, context: html, text, full: html, text
    Fixing indentation and putting function comment in right place. Code standards people!
• src/hg/hgTracks/hgTracks.h
  • 1.207 lines changed: 6, context: html, text, full: html, text
    Taking a few more steps towards making the makeItems type custom track. It actually seems to be storing ranges in the customTrash database and displaying them now based on your javascript selections!
  • 1.206 lines changed: 15, context: html, text, full: html, text
    Starting to get makeItems to work as a custom track type.
  • 1.205 lines changed: 1, context: html, text, full: html, text
    Starting to implement more of the makeItems track javascript/C interface.
  • 1.204 lines changed: 3, context: html, text, full: html, text
    Starting to work on makeItems type tracks.
• src/hg/hgTracks/makeItemsTrack.c
  • 1.8 lines changed: 6, context: html, text, full: html, text
    A little cleanup.
  • 1.7 lines changed: 2, context: html, text, full: html, text
    Removing default values for name and description from makeItems.
  • 1.6 lines changed: 62, context: html, text, full: html, text
    Making it so can edit name and description of makeItems item.
  • 1.5 lines changed: 23, context: html, text, full: html, text
    Adding ID to makeItemsItem.
  • 1.4 lines changed: 40, context: html, text, full: html, text
    Replacing dummy first item with something better. Restoring click to details page, which is still sparse.
  • 1.3 lines changed: 67, context: html, text, full: html, text
    Taking a few more steps towards making the makeItems type custom track. It actually seems to be storing ranges in the customTrash database and displaying them now based on your javascript selections!
  • 1.2 lines changed: 6, context: html, text, full: html, text
    Starting to get makeItems to work as a custom track type.
  • 1.1 lines changed: 32, context: html, text, full: html, text
    Starting to work on makeItems type tracks.
• src/hg/hgTracks/makefile
  • 1.91 lines changed: 1, context: html, text, full: html, text
    Starting to work on makeItems type tracks.
• src/hg/hgTracks/simpleTracks.c
  • 1.133 lines changed: 4, context: html, text, full: html, text
    Taking a few more steps towards making the makeItems type custom track. It actually seems to be storing ranges in the customTrash database and displaying them now based on your javascript selections!
  • 1.132 lines changed: 4, context: html, text, full: html, text
    Starting to work on makeItems type tracks.
• src/hg/hgc/hgc.c
  • 1.1610 lines changed: 2, context: html, text, full: html, text
    Adding some details page handling to makeItems.
• src/hg/hgc/hgc.h
  • 1.51 lines changed: 3, context: html, text, full: html, text
    Adding some details page handling to makeItems.
• src/hg/hgc/makeItemsClick.c
  • 1.2 lines changed: 53, context: html, text, full: html, text
    Making it so can edit name and description of makeItems item.
  • 1.1 lines changed: 38, context: html, text, full: html, text
    Adding some details page handling to makeItems.
• src/hg/hgc/makefile
  • 1.66 lines changed: 1, context: html, text, full: html, text
    Adding some details page handling to makeItems.
• src/hg/inc/makeItemsItem.h
  • 1.5 lines changed: 2, context: html, text, full: html, text
    Adding makeItemsItemAutoSqlString.
  • 1.4 lines changed: 2, context: html, text, full: html, text
    Adding id column
  • 1.3 lines changed: 6, context: html, text, full: html, text
    Taking a few more steps towards making the makeItems type custom track. It actually seems to be storing ranges in the customTrash database and displaying them now based on your javascript selections!
  • 1.2 lines changed: 44, context: html, text, full: html, text
    Updating comment and name.
  • 1.1 lines changed: 95, context: html, text, full: html, text
    Adding makeItemsItem autoSql object.
• src/hg/js/hgTracks.js
  • 1.66 lines changed: 69, context: html, text, full: html, text
    Refactoring so that ruler and makeItems share code to convert from pixel to chromosome coordinates.
  • 1.65 lines changed: 44, context: html, text, full: html, text
    The makeItems drag now returns a proper track name, chrom, start, end.
  • 1.64 lines changed: 2, context: html, text, full: html, text
    Making it so that list of makeItems tracks to initialize is determined at run time. Making hgTracks.c generate a javascript function hgTrackInitTracks() that gets called during the javascript init.
  • 1.63 lines changed: 20, context: html, text, full: html, text
    Starting to work on makeItems type tracks.
• src/hg/lib/customFactory.c
  • 1.122 lines changed: 1, context: html, text, full: html, text
    Removing default values for name and description from makeItems.
  • 1.121 lines changed: 2, context: html, text, full: html, text
    Adding id field to makeItemsItem.
  • 1.120 lines changed: 19, context: html, text, full: html, text
    Taking a few more steps towards making the makeItems type custom track. It actually seems to be storing ranges in the customTrash database and displaying them now based on your javascript selections!
  • 1.119 lines changed: 133, context: html, text, full: html, text
    Starting to get makeItems to work as a custom track type.
• src/hg/lib/hCytoBand.c
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/hg/lib/makeItemsItem.as
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Adding id column
  • 1.3 lines changed: 5, context: html, text, full: html, text
    Taking a few more steps towards making the makeItems type custom track. It actually seems to be storing ranges in the customTrash database and displaying them now based on your javascript selections!
  • 1.2 lines changed: 2, context: html, text, full: html, text
    Updating comment and name.
  • 1.1 lines changed: 13, context: html, text, full: html, text
    Adding makeItemsItem autoSql object.
• src/hg/lib/makeItemsItem.c
  • 1.6 lines changed: 19, context: html, text, full: html, text
    Adding makeItemsItemAutoSqlString.
  • 1.5 lines changed: 11, context: html, text, full: html, text
    Adding id column
  • 1.4 lines changed: 2, context: html, text, full: html, text
    Adding id field to makeItemsItem.
  • 1.3 lines changed: 33, context: html, text, full: html, text
    Taking a few more steps towards making the makeItems type custom track. It actually seems to be storing ranges in the customTrash database and displaying them now based on your javascript selections!
  • 1.2 lines changed: 40, context: html, text, full: html, text
    Updating comment and name.
  • 1.1 lines changed: 233, context: html, text, full: html, text
    Adding makeItemsItem autoSql object.
• src/hg/lib/makeItemsItem.sql
  • 1.4 lines changed: 2, context: html, text, full: html, text
    Adding id field to makeItemsItem.
  • 1.3 lines changed: 5, context: html, text, full: html, text
    Taking a few more steps towards making the makeItems type custom track. It actually seems to be storing ranges in the customTrash database and displaying them now based on your javascript selections!
  • 1.2 lines changed: 2, context: html, text, full: html, text
    Updating comment and name.
  • 1.1 lines changed: 19, context: html, text, full: html, text
    Adding makeItemsItem autoSql object.
• src/hg/lib/makefile
  • 1.406 lines changed: 2, context: html, text, full: html, text
    Adding makeItemsItem autoSql object.
• src/hg/makeDb/doc/ucscGenes/mm9.ucscGenes12.csh
  • 1.5 lines changed: 42, context: html, text, full: html, text
    Committing changes made a while back for last bits of mm9 known gene rebuild.
• src/hg/makeDb/trackDb/README
  • 1.106 lines changed: 3, context: html, text, full: html, text
    Expanding bigWig type docs a little.
• src/inc/bbiFile.h
  • 1.22 lines changed: 2, context: html, text, full: html, text
    Adding extra sig for detection of truncation at end of file.
  • 1.21 lines changed: 2, context: html, text, full: html, text
    Fixing max field in second and higher level zooms of bedGraphToBigWig and bedToBigBed.
• src/inc/memgfx.h
  • 1.28 lines changed: 1, context: html, text, full: html, text
    Adding mgTimes34Font()
• src/lib/bbiWrite.c
  • 1.13 lines changed: 1, context: html, text, full: html, text
    Fixing max field in second and higher level zooms of bedGraphToBigWig and bedToBigBed.
• src/lib/bwgCreate.c
  • 1.23 lines changed: 4, context: html, text, full: html, text
    Adding extra sig for detection of truncation at end of file.
• src/lib/font/mgCourier10.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgCourier12.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgCourier14.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgCourier8.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgHelvetica10.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgHelvetica12.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgHelvetica18.c
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgHelvetica24.c
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgHelvetica8.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgHelveticaBold10.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgHelveticaBold12.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgHelveticaBold24.c
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgHelveticaBold8.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgSixhi6.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgTimes10.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgTimes12.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/lib/font/mgTimes8.c
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Continued tuning of new font system.
• src/utils/bedGraphToBigWig/bedGraphToBigWig.c
  • 1.26 lines changed: 4, context: html, text, full: html, text
    Adding extra sig for detection of truncation at end of file.
• src/utils/bedToBigBed/bedToBigBed.c
  • 1.23 lines changed: 4, context: html, text, full: html, text
    Adding extra sig for detection of truncation at end of file.