src/hg/encode/encodeValidate/doEncodeValidate.pl 1.223

Index: src/hg/encode/encodeValidate/doEncodeValidate.pl
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/encode/encodeValidate/doEncodeValidate.pl,v
retrieving revision 1.222
retrieving revision 1.223
diff -b -B -U 4 -r1.222 -r1.223
--- src/hg/encode/encodeValidate/doEncodeValidate.pl	22 Apr 2010 20:57:07 -0000	1.222
+++ src/hg/encode/encodeValidate/doEncodeValidate.pl	28 Apr 2010 23:14:08 -0000	1.223
@@ -2013,8 +2013,22 @@
         print TRACK_RA "    subGroups $subGroups\n";
         if($type eq 'wig') {
             my $placeHolder = Encode::wigMinMaxPlaceHolder($tableName);
             print TRACK_RA "    type $type $placeHolder\n";
+        } elsif($type eq 'bigWig') {
+            my @cmds;
+            my $tmpFile = $Encode::autoCreatedPrefix . $type  ;
+            push @cmds, "bigWigInfo -minMax @{$ddfLine->{files}}";
+            my $safe = SafePipe->new(CMDS => \@cmds, STDOUT => $tmpFile, DEBUG => $opt_verbose - 1);
+            if(my $err = $safe->exec()) {
+                print STDERR  "ERROR: failed bigWigInfo: " . $safe->stderr() . "\n";
+                # don't show end-user pipe error(s)
+                pushError(\@errors, "failed creation of trackDb");
+            }
+            my $lines = Encode::readFile($tmpFile);
+            my $line = shift(@{$lines});
+            print TRACK_RA "    type bigWig " . $line . "\n";
+
         } elsif($type eq 'gtf') { # GTF is converted to and loaded as genePred
             print TRACK_RA "    type genePred\n";
         } elsif($type eq 'tagAlign') { # tagAligns are bed 6 but with column called 'sequence' instead of 'name'
             print TRACK_RA "    type bed 6\n";