src/hg/inc/yaleGencodeAssoc.h 1.1

Index: src/hg/inc/yaleGencodeAssoc.h
===================================================================
RCS file: src/hg/inc/yaleGencodeAssoc.h
diff -N src/hg/inc/yaleGencodeAssoc.h
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/inc/yaleGencodeAssoc.h	30 Apr 2010 21:22:31 -0000	1.1
@@ -0,0 +1,63 @@
+/* yaleGencodeAssoc.h was originally generated by the autoSql program, which also 
+ * generated yaleGencodeAssoc.c and yaleGencodeAssoc.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef YALEGENCODEASSOC_H
+#define YALEGENCODEASSOC_H
+
+#define YALESANGERASSOC_NUM_COLS 3
+
+struct yaleGencodeAssoc
+/* association of Yale pseudogenes with Gencode transcripts */
+    {
+    struct yaleGencodeAssoc *next;  /* Next in singly linked list. */
+    char *transcript;	/* Gencode transcript id */
+    char *yaleId;	/* Yale id */
+    char *locus;	/* Gencode locus id */
+    };
+
+void yaleGencodeAssocStaticLoad(char **row, struct yaleGencodeAssoc *ret);
+/* Load a row from yaleGencodeAssoc table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct yaleGencodeAssoc *yaleGencodeAssocLoad(char **row);
+/* Load a yaleGencodeAssoc from row fetched with select * from yaleGencodeAssoc
+ * from database.  Dispose of this with yaleGencodeAssocFree(). */
+
+struct yaleGencodeAssoc *yaleGencodeAssocLoadAll(char *fileName);
+/* Load all yaleGencodeAssoc from whitespace-separated file.
+ * Dispose of this with yaleGencodeAssocFreeList(). */
+
+struct yaleGencodeAssoc *yaleGencodeAssocLoadAllByChar(char *fileName, char chopper);
+/* Load all yaleGencodeAssoc from chopper separated file.
+ * Dispose of this with yaleGencodeAssocFreeList(). */
+
+#define yaleGencodeAssocLoadAllByTab(a) yaleGencodeAssocLoadAllByChar(a, '\t');
+/* Load all yaleGencodeAssoc from tab separated file.
+ * Dispose of this with yaleGencodeAssocFreeList(). */
+
+struct yaleGencodeAssoc *yaleGencodeAssocCommaIn(char **pS, struct yaleGencodeAssoc *ret);
+/* Create a yaleGencodeAssoc out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new yaleGencodeAssoc */
+
+void yaleGencodeAssocFree(struct yaleGencodeAssoc **pEl);
+/* Free a single dynamically allocated yaleGencodeAssoc such as created
+ * with yaleGencodeAssocLoad(). */
+
+void yaleGencodeAssocFreeList(struct yaleGencodeAssoc **pList);
+/* Free a list of dynamically allocated yaleGencodeAssoc's */
+
+void yaleGencodeAssocOutput(struct yaleGencodeAssoc *el, FILE *f, char sep, char lastSep);
+/* Print out yaleGencodeAssoc.  Separate fields with sep. Follow last field with lastSep. */
+
+#define yaleGencodeAssocTabOut(el,f) yaleGencodeAssocOutput(el,f,'\t','\n');
+/* Print out yaleGencodeAssoc as a line in a tab-separated file. */
+
+#define yaleGencodeAssocCommaOut(el,f) yaleGencodeAssocOutput(el,f,',',',');
+/* Print out yaleGencodeAssoc as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* YALEGENCODEASSOC_H */
+