src/hg/makeDb/doc/calJac3.txt 1.8

Index: src/hg/makeDb/doc/calJac3.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/calJac3.txt,v
retrieving revision 1.7
retrieving revision 1.8
diff -b -B -U 4 -r1.7 -r1.8
--- src/hg/makeDb/doc/calJac3.txt	26 Apr 2010 16:00:20 -0000	1.7
+++ src/hg/makeDb/doc/calJac3.txt	28 Apr 2010 23:16:15 -0000	1.8
@@ -1172,8 +1172,23 @@
     ln -s ../../lastz.mm9/axtChain/calJac3.mm9.synNet.maf.gz .
     ln -s ../../lastz.canFam2/axtChain/calJac3.canFam2.synNet.maf.gz .
     ln -s ../../lastz.monDom5/axtChain/calJac3.monDom5.synNet.maf.gz .
 
+    mkdir /hive/data/genomes/calJac3/bed/multiz13way/splitMaf
+    cd /hive/data/genomes/calJac3/bed/multiz13way/splitMaf
+    for D in gorGor2 tarSyr1 papHam1 otoGar1 micMur1
+do
+    mkdir ${D}
+    mafSplit -useHashedName=8 -byTarget /dev/null ${D}/ \
+        ../singleMafs/calJac3.${D}.rbest.maf.gz
+done
+for D in ponAbe2 hg19 panTro2 rheMac2 mm9 canFam2 monDom5
+do
+    mkdir ${D}
+    mafSplit -useHashedName=8 -byTarget /dev/null ${D}/ \
+        ../singleMafs/calJac3.${D}.synNet.maf.gz
+done
+
     cd /hive/data/genomes/calJac3/bed/multiz13way
     mkdir penn
     cp -p /cluster/bin/penn/multiz.2008-11-25/multiz penn 
     cp -p /cluster/bin/penn/multiz.2008-11-25/maf_project penn