src/hg/makeDb/schema/all.joiner 1.791
1.791 2010/04/29 19:58:44 antonio
adding some things to tablesIgnored and removing redundantentries
Index: src/hg/makeDb/schema/all.joiner
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/schema/all.joiner,v
retrieving revision 1.790
retrieving revision 1.791
diff -b -B -U 4 -r1.790 -r1.791
--- src/hg/makeDb/schema/all.joiner 28 Apr 2010 18:28:48 -0000 1.790
+++ src/hg/makeDb/schema/all.joiner 29 Apr 2010 19:58:44 -0000 1.791
@@ -2951,9 +2951,9 @@
blatFr1
chromInfo
cpgIsland
cpgIslandExt
- ctgPos
+ ctgPos%
cytoBand
cytoBandIdeo
evofold
exoniphy
@@ -2962,11 +2962,13 @@
gbDelete_tmp
gc5Base
gcPercent
genscanSubopt
+ %gold
grp
hgFindSpec%
history
+ intronEst
knownAlt
miRNA
nestedRepeats
nestedRepeatsRM327
@@ -3018,9 +3019,8 @@
pbStamp
pep%Dist
tablesIgnored hg19
- gold
bacEndPairsBad
multizMHCSummary
netSyn_mann_hap4
net_dbb_hap3
@@ -3072,27 +3072,9 @@
tablesIgnored mm9
crgMapability%
rest
-tablesIgnored $calJac
- gold
-
-tablesIgnored $petMar
- %gold
- intronEst
-
-tablesIgnored $braFlo
- %gold
- intronEst
-
-tablesIgnored $cavPor
- gold
-
-tablesIgnored $cb
- chr%_gold
-
tablesIgnored $ce
- chr%_gold
chr%_wabaCbr
wabaCbr
nucleosomeControl
nucleosomeFragmentsSense
@@ -3120,69 +3102,25 @@
fbUniProt
flyreg
flyreg2
-tablesIgnored $loxAfr
- gold
-
-tablesIgnored $equCab
- chr%_gold
-
-tablesIgnored $fr
- chr%_gold
-
tablesIgnored $galGal
- chr%_gold
supercontig
caCondor454
tablesIgnored $danRer
- chr%_gold
- ctgPos2
wz_ests
-tablesIgnored $caePb
- chr%_gold
- ctgPos2
-
-tablesIgnored $caeRem
- chr%_gold
- ctgPos2
-
-tablesIgnored $caeJap
- chr%_gold
- ctgPos2
-
-tablesIgnored $priPac
- chr%_gold
- ctgPos2
-
tablesIgnored $canFam
- chr%_gold
genomicSuperDups
-tablesIgnored $droYak
- chr%_gold
-
-tablesIgnored $droMult
- gold
- intronEst
-
-tablesIgnored $anoCar
- gold
-
tablesIgnored $anoGam
- chr%_gold
anoEstNcl
tablesIgnored $bosTau
- gold
- intronEst
contigOrient
tablesIgnored $apiMel
- gold
- intronEst
brhInparalog
modelRefGene
scaffolds
@@ -3255,15 +3193,15 @@
cnpSharp2
cnpSharpSampleCount
cnpSharpSamples
cnpTuzun
- ctgPos
delConrad
delConrad2
delHinds
delHinds2
delMccarroll
dgv
+ encode%
eponine
exaptedRepeats
fox2ClipClusters
fox2ClipSeq
@@ -3308,125 +3246,8 @@
vistaEnhancers
wgRna
zoom1_affyTranscriptome
zoom2_affyTranscriptome
- encodeAffyChIpRnapHl60PvalHr00
- encodeAffyChIpRnapHl60PvalHr02
- encodeAffyChIpRnapHl60PvalHr08
- encodeAffyChIpRnapHl60PvalHr32
- encodeAffyChIpRnapHl60SitesHr00
- encodeAffyChIpRnapHl60SitesHr02
- encodeAffyChIpRnapHl60SitesHr08
- encodeAffyChIpRnapHl60SitesHr32
- encodeAffyRnaHl60SigHr00
- encodeAffyRnaHl60SigHr02
- encodeAffyRnaHl60SigHr08
- encodeAffyRnaHl60SigHr32
- encodeAffyRnaHl60SitesHr00
- encodeAffyRnaHl60SitesHr02
- encodeAffyRnaHl60SitesHr08
- encodeAffyRnaHl60SitesHr32
- encodeAffyEc1BrainCerebellumSites
- encodeAffyEc51BrainCerebellumSites
- encodeAffyEc1BrainFrontalLobeSites
- encodeAffyEc51BrainFrontalLobeSites
- encodeAffyEc1BrainHippocampusSites
- encodeAffyEc51BrainHippocampusSites
- encodeAffyEc1BrainHypothalamusSites
- encodeAffyEc51BrainHypothalamusSites
- encodeAffyEc1FetalKidneySites
- encodeAffyEc51FetalKidneySites
- encodeAffyEc1FetalSpleenSites
- encodeAffyEc51FetalSpleenSites
- encodeAffyEc1PlacentaSites
- encodeAffyEc51PlacentaSites
- encodeAffyEc1TestisSites
- encodeAffyEc51TestisSites
- encodeAffyEc1FetalTestisSites
- encodeAffyEc51FetalTestisSites
- encodeAffyEc1ProstateSites
- encodeAffyEc51ProstateSites
- encodeAffyEc1OvarySites
- encodeAffyEc51OvarySites
- encodeAffyEc1HeLaC1S3Sites
- encodeAffyEc51HeLaC1S3Sites
- encodeAffyEc1GM06990Sites
- encodeAffyEc51GM06990Sites
- encodeAffyEc1HepG2Sites
- encodeAffyEc51HepG2Sites
- encodeAffyEc1K562Sites
- encodeAffyEc51K562Sites
- encodeAffyEc1TertBJSites
- encodeAffyEc51TertBJSites
- encodeAffyEc1BrainCerebellumSignal
- encodeAffyEc51BrainCerebellumSignal
- encodeAffyEc1BrainFrontalLobeSignal
- encodeAffyEc51BrainFrontalLobeSignal
- encodeAffyEc1BrainHippocampusSignal
- encodeAffyEc51BrainHippocampusSignal
- encodeAffyEc1BrainHypothalamusSignal
- encodeAffyEc51BrainHypothalamusSignal
- encodeAffyEc1FetalKidneySignal
- encodeAffyEc51FetalKidneySignal
- encodeAffyEc1FetalSpleenSignal
- encodeAffyEc51FetalSpleenSignal
- encodeAffyEc1PlacentaSignal
- encodeAffyEc51PlacentaSignal
- encodeAffyEc1TestisSignal
- encodeAffyEc51TestisSignal
- encodeAffyEc1FetalTestisSignal
- encodeAffyEc51FetalTestisSignal
- encodeAffyEc1ProstateSignal
- encodeAffyEc51ProstateSignal
- encodeAffyEc1OvarySignal
- encodeAffyEc51OvarySignal
- encodeAffyEc1HeLaC1S3Signal
- encodeAffyEc51HeLaC1S3Signal
- encodeAffyEc1GM06990Signal
- encodeAffyEc51GM06990Signal
- encodeAffyEc1HepG2Signal
- encodeAffyEc51HepG2Signal
- encodeAffyEc1K562Signal
- encodeAffyEc51K562Signal
- encodeAffyEc1TertBJSignal
- encodeAffyEc51TertBJSignal
- encodeEvoFold
- encodeGisChip%
- encodeGencodeGenePolyA%
- enocdeGencodeRaceFrags%
- encodeNhgriDnaseHs%
- encodeRegulomeDnaseGM06990%
- encodeSangerChip%
- encodeStanfordPromoters%
- encodeUcsdChipAch3Imr90
- encodeUcsdChipMeh3k4Imr90
- encodeUcsdChipRnapHct116
- encodeUcsdChipRnapHela
- encodeUcsdChipRnapImr90
- encodeUcsdChipRnapThp1
- encodeUcsdChipTaf250Hct116
- encodeUcsdChipTaf250Hela
- encodeUcsdChipTaf250Imr90
- encodeUcsdChipTaf250Thp1
- encodeUcsdNgChipKnownSites
- encodeUcsdNgChipNovelSites
- encodeUcsdNgChipSignal
- encodeUcsdNgHeLaH3K4me3_p0
- encodeUcsdNgHeLaH3K4me3_p30
- encodeUcsdNgHeLaRnap_p0
- encodeUcsdNgHeLaRnap_p30
- encodeUcsdNgValChipH3K4me
- encodeUcsdNgValChipH3ac
- encodeUcsdNgValChipRnap
- encodeUcsdNgValChipTaf
- encodeUncFaireSignal
- encodeUncFairePeaks
- encodeUncFairePeaksChipotle
- encodeUvaDnaRep%
- encodeYaleChipPval%
- encodeYaleChipSignal%
- encodeYaleChipSites%
- encodeTba%
kiddEichlerValidAbc7
kiddEichlerValidAbc8
kiddEichlerValidAbc9
kiddEichlerValidAbc10
@@ -3437,53 +3258,42 @@
kiddEichlerValidG248
wgEncode%
tablesIgnored $mm
- chr%_gold
syntenyRat
syntenyHuman
- ctgPos
rikenCageCtssMinus
rikenCageCtssPlus
rikenCageTc
tablesIgnored $panTro
- chr%_gold
humanDels
tablesIgnored $rn
- chr%_gold
all_sts_primer
bactigPos
recombRateRat
syntenyMouse
syntenyHuman
tablesIgnored $sacCer
- chr%_gold
- chr%_gap
2micron_mrna
2micron_intronEst
2micron_est
- 2micron_gold
2micron_gap
sgdClone
yeastP2P
uwFootprintsMappability
uwFootprintsPrints
uwFootprintsTagCounts
tablesIgnored $tetNig
- gold
ecoresHg17
cytokines
hoxGenes
tablesIgnored $felCat
- gold
- intronEst
microsat
- ctgPos2
tablesIgnored hg16
chicken_hmrg
rat_hmrg
@@ -3495,34 +3305,12 @@
tablesIgnored canFam2
uncertified
-tablesIgnored equCab2
- ctgPos2
-
tablesIgnored oryLat2
microsat
-tablesIgnored oryCun2
- ctgPos2
- gold
- intronEst
-
tablesIgnored susScr2
bosTau4ChainPileUp
- gold
- ctgPos2
-tablesIgnored ailMel1
- gold
-tablesIgnored aplCal1
- gold
- intronEst
-
-tablesIgnored oviAri1
- gold
- ctgPos2
-tablesIgnored calJac3
- intronEst
- ctgPos2