src/hg/lib/yaleGencodeAssoc.c 1.1

Index: src/hg/lib/yaleGencodeAssoc.c
===================================================================
RCS file: src/hg/lib/yaleGencodeAssoc.c
diff -N src/hg/lib/yaleGencodeAssoc.c
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/lib/yaleGencodeAssoc.c	30 Apr 2010 21:23:38 -0000	1.1
@@ -0,0 +1,132 @@
+/* yaleGencodeAssoc.c was originally generated by the autoSql program, which also 
+ * generated yaleGencodeAssoc.h and yaleGencodeAssoc.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "yaleGencodeAssoc.h"
+
+static char const rcsid[] = "$Id$";
+
+void yaleGencodeAssocStaticLoad(char **row, struct yaleGencodeAssoc *ret)
+/* Load a row from yaleGencodeAssoc table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->transcript = row[0];
+ret->yaleId = row[1];
+ret->locus = row[2];
+}
+
+struct yaleGencodeAssoc *yaleGencodeAssocLoad(char **row)
+/* Load a yaleGencodeAssoc from row fetched with select * from yaleGencodeAssoc
+ * from database.  Dispose of this with yaleGencodeAssocFree(). */
+{
+struct yaleGencodeAssoc *ret;
+
+AllocVar(ret);
+ret->transcript = cloneString(row[0]);
+ret->yaleId = cloneString(row[1]);
+ret->locus = cloneString(row[2]);
+return ret;
+}
+
+struct yaleGencodeAssoc *yaleGencodeAssocLoadAll(char *fileName) 
+/* Load all yaleGencodeAssoc from a whitespace-separated file.
+ * Dispose of this with yaleGencodeAssocFreeList(). */
+{
+struct yaleGencodeAssoc *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[3];
+
+while (lineFileRow(lf, row))
+    {
+    el = yaleGencodeAssocLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct yaleGencodeAssoc *yaleGencodeAssocLoadAllByChar(char *fileName, char chopper) 
+/* Load all yaleGencodeAssoc from a chopper separated file.
+ * Dispose of this with yaleGencodeAssocFreeList(). */
+{
+struct yaleGencodeAssoc *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[3];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = yaleGencodeAssocLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct yaleGencodeAssoc *yaleGencodeAssocCommaIn(char **pS, struct yaleGencodeAssoc *ret)
+/* Create a yaleGencodeAssoc out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new yaleGencodeAssoc */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->transcript = sqlStringComma(&s);
+ret->yaleId = sqlStringComma(&s);
+ret->locus = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void yaleGencodeAssocFree(struct yaleGencodeAssoc **pEl)
+/* Free a single dynamically allocated yaleGencodeAssoc such as created
+ * with yaleGencodeAssocLoad(). */
+{
+struct yaleGencodeAssoc *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->transcript);
+freeMem(el->yaleId);
+freeMem(el->locus);
+freez(pEl);
+}
+
+void yaleGencodeAssocFreeList(struct yaleGencodeAssoc **pList)
+/* Free a list of dynamically allocated yaleGencodeAssoc's */
+{
+struct yaleGencodeAssoc *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    yaleGencodeAssocFree(&el);
+    }
+*pList = NULL;
+}
+
+void yaleGencodeAssocOutput(struct yaleGencodeAssoc *el, FILE *f, char sep, char lastSep) 
+/* Print out yaleGencodeAssoc.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->transcript);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->yaleId);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->locus);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+