src/hg/lib/gbStatus.as 1.1
1.1 2010/04/28 19:55:24 markd
added gbStatus schema doc
Index: src/hg/lib/gbStatus.as
===================================================================
RCS file: src/hg/lib/gbStatus.as
diff -N src/hg/lib/gbStatus.as
--- /dev/null 1 Jan 1970 00:00:00 -0000
+++ src/hg/lib/gbStatus.as 28 Apr 2010 19:55:24 -0000 1.1
@@ -0,0 +1,19 @@
+table gbStatus
+"Parallel to gbCdnaInfo to target state status an entry"
+ (
+ string acc; "Genbank/EMBL accession (without .version)"
+ ushort version; "Version number in Genbank"
+ string moddate; "Date last modified, in SQL DATE format/ascii YYYY-MM-DD"
+ enum('EST','mRNA') type; "Either EST or mRNA.
+ enum('GenBank','RefSeq') srcDb; "NCBI database"
+ enum('native','xeno') orgCat; "category of entry organism relative to this database"
+ uint gbSeq; "id in gbSeq table"
+ uint numAligns; "number of alignments"
+ char(8) seqRelease; "genbank release where sequence was last update"
+ char(10) seqUpdate; "genbank update where sequence was last update"
+ char(8) metaRelease; "genbank release where metadata was last update"
+ char(10) metaUpdate; "genbank update where metadata was last update"
+ char(8) extRelease; "genbank release where gbExtFile was last update"
+ char(10) extUpdate; "genbank update where gbExtFile was last update"
+ string timestamp; "time of last update of this entry in genome browser DB"
+ )