mary: changes by file

review to branch (2010-04-27 to 2010-05-04) v230

• src/hg/makeDb/trackDb/chimp/panTro1/trackDb.ra
  • 1.44 lines changed: 9, context: html, text, full: html, text
    removing stanzas to keep panTro1 genbank tables different on RR from beta (updating panTro1 to not have human RefSeq genes as native chimp)
• src/hg/makeDb/trackDb/chimp/panTro2/estWithHs.html
  • 1.2 lines changed: 108, context: html, text, full: html, text
    removing unecessary html files previous used by genbank tracks to have both chimp and human mRNAs be treated as native chimp ones
• src/hg/makeDb/trackDb/chimp/panTro2/intronEstWithHs.html
  • 1.2 lines changed: 117, context: html, text, full: html, text
    removing unecessary html files previous used by genbank tracks to have both chimp and human mRNAs be treated as native chimp ones
• src/hg/makeDb/trackDb/chimp/panTro2/mrnaWithHs.html
  • 1.2 lines changed: 73, context: html, text, full: html, text
    removing unecessary html files previous used by genbank tracks to have both chimp and human mRNAs be treated as native chimp ones
• src/hg/makeDb/trackDb/chimp/panTro2/refGeneWithHs.html
  • 1.2 lines changed: 64, context: html, text, full: html, text
    removing unecessary html files previous used by genbank tracks to have both chimp and human mRNAs be treated as native chimp ones
• src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra
  • 1.58 lines changed: 63, context: html, text, full: html, text
    removing stanzas that put human mRNAs and Ests in native chimp tracks for genbank
• src/hg/makeDb/trackDb/chimp/panTro2/xenoMrnaNoHs.html
  • 1.2 lines changed: 80, context: html, text, full: html, text
    removing unecessary html files previous used by genbank tracks to have both chimp and human mRNAs be treated as native chimp ones
• src/hg/makeDb/trackDb/chimp/panTro2/xenoRefGeneNoHs.html
  • 1.2 lines changed: 55, context: html, text, full: html, text
    removing unecessary html files previous used by genbank tracks to have both chimp and human mRNAs be treated as native chimp ones
• src/utils/qa/chain.csh
  • 1.32 lines changed: 14, context: html, text, full: html, text
    adjusting message about checking the matrix, chainMinScore and chainLinearGap