src/hg/encode/encodeLoad/doEncodeLoad.pl 1.76

Index: src/hg/encode/encodeLoad/doEncodeLoad.pl
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/encode/encodeLoad/doEncodeLoad.pl,v
retrieving revision 1.75
retrieving revision 1.76
diff -b -B -U 4 -r1.75 -r1.76
--- src/hg/encode/encodeLoad/doEncodeLoad.pl	25 Mar 2010 00:00:09 -0000	1.75
+++ src/hg/encode/encodeLoad/doEncodeLoad.pl	20 Apr 2010 22:04:21 -0000	1.76
@@ -253,9 +253,9 @@
         if ((() = split(" ", $fileList)) != 1) { 
 	    die "BigBed must be loaded with a single file but a list of files was supplied ($fileList)\n";
 	}
 	# Create bigBed binary file
-        my @cmds = ( "mkdir -p sortTmp; sort  -k1,1 -k2,2n $fileList > sortTmp/loadTmp.bed; /cluster/bin/x86_64/bedToBigBed -as=$Encode::sqlCreate/${sqlTable}.as sortTmp/loadTmp.bed $configPath/${assembly}_chromInfo.txt ${gbdbDir}/${tableName}.bb");
+        my @cmds = ( "mkdir -p sortTmp; sort  -k1,1 -k2,2n $fileList > sortTmp/loadTmp.bed; /cluster/bin/x86_64/bedToBigBed -as=$Encode::sqlCreate/${sqlTable}.as sortTmp/loadTmp.bed ../$configPath/${assembly}_chromInfo.txt ${gbdbDir}/${tableName}.bb");
         HgAutomate::verbose(2, "loadBigBed cmds [".join(" ; ",@cmds)."]\n");
         my $safe = SafePipe->new(CMDS => \@cmds, STDOUT => "/dev/null", DEBUG => $opt_verbose > 2);
         if(my $err = $safe->exec()) {
             die("ERROR: File(s) '$fileList' failed bedToBigBed:\n" . $safe->stderr() . "\n");
@@ -636,8 +636,16 @@
 <em>$daf->{lab}  $daf->{dataType}</em></A> track description. </p>
 
 <p><B>Data is <A HREF="http://genome.ucsc.edu/ENCODE/terms.html">RESTRICTED FROM USE</a>
 in publication  until the restriction date noted for the given data file.</B></p>
+<p>
+There are two files within this directory that contain information about the dow
+nloads:
+<LI><A HREF="files.txt">files.txt</A> which is a tab-separated file with the nam
+e and metadata for each download.</LI>
+<LI><A HREF="md5sum.txt">md5sum.txt</A> which is a list of the md5sum output for
+ each download.</LI>
+ <HR>
 END
 }
 
 exit(0);