src/hg/hgTables/hgTables.c 1.193

Index: src/hg/hgTables/hgTables.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgTables/hgTables.c,v
retrieving revision 1.192
retrieving revision 1.193
diff -b -B -U 4 -r1.192 -r1.193
--- src/hg/hgTables/hgTables.c	13 Apr 2010 04:42:01 -0000	1.192
+++ src/hg/hgTables/hgTables.c	22 Apr 2010 19:25:22 -0000	1.193
@@ -1501,8 +1501,10 @@
 	dispatch(conn);
 	return;
 	}
     }
+if (doGreat())
+    verifyGreatFormat(output);
 if (sameString(output, outPrimaryTable))
     {
     if (doGalaxy() && !cgiOptionalString(hgtaDoGalaxyQuery))
         sendParamsToGalaxy(hgtaDoTopSubmit, "get output");
@@ -1545,8 +1547,10 @@
 else if (sameString(output, outWigBed))
     {
     if (doGalaxy() && !cgiOptionalString(hgtaDoGalaxyQuery))
         sendParamsToGalaxy(hgtaDoTopSubmit, "get output");
+    else if (doGreat() && !cgiOptionalString(hgtaDoGreatQuery))
+        doGreatTopLevel();
     else
         doOutWigBed(track, table, conn);
     }
 else if (sameString(output, outMaf))
@@ -1676,9 +1680,9 @@
     if (doGalaxy() && !cgiOptionalString(hgtaDoGalaxyQuery))
         sendParamsToGalaxy(hgtaDoGenomicDna, "submit");
     else
         doGenomicDna(conn);
-else if (cartVarExists(cart, hgtaDoGetBed))
+else if (cartVarExists(cart, hgtaDoGetBed) || cartUsualBoolean(cart, hgtaDoGreatOutput, FALSE))
     doGetBed(conn);
 else if (cartVarExists(cart, hgtaDoGetCustomTrackTb))
     doGetCustomTrackTb(conn);
 else if (cartVarExists(cart, hgtaDoGetCustomTrackGb))
@@ -1762,11 +1765,14 @@
 if (lookupPosition())
     {
     /* Init track and group lists and figure out what page to put up. */
     initGroupsTracksTables();
+
+    if (cartUsualBoolean(cart, hgtaDoGreatOutput, FALSE))
+        doGetGreatOutput(dispatch);
+    else
     dispatch();
     }
-
 /* Save variables. */
 cartCheckout(&cart);
 }