src/utils/qa/chain.csh 1.30

Index: src/utils/qa/chain.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/chain.csh,v
retrieving revision 1.29
retrieving revision 1.30
diff -b -B -U 4 -r1.29 -r1.30
--- src/utils/qa/chain.csh	9 Mar 2010 22:52:02 -0000	1.29
+++ src/utils/qa/chain.csh	23 Apr 2010 21:55:57 -0000	1.30
@@ -371,17 +371,29 @@
 
 
 echo
 echo "*~*~*~*~*~*~*~*~*~*~*~*~*~*"
-echo  "Find the correct parameters for the 3 trackDb variables"
-echo  "which appears in the chain-OtherOrg download file."
-echo  "Compare this to the chain description page."
+#echo  "Find the correct parameters for the 3 trackDb variables"
+#echo  "which appears in the chain-OtherOrg download file."
+#echo  "Compare this to the chain description page."
+echo   "Go to the chain/net description page for this track"
+echo   "and compare the output which is taken from the chain-OtherOrg download file:"
 echo
 
 getMatrixLines.csh $db $otherDb
 getChainLines.csh $db $otherDb
 
 
+set OrgName=`hgsql -Ne "SELECT organism FROM dbDb WHERE NAME LIKE '$db%'" hgcentraltest` 
+
+set OrgName=`echo $OrgName | tr "[:upper:]" "[:lower:]"` 
+
+
+echo
+echo   "If the output doesn't match, put overrides in this file with the above output: " 
+echo   "/cluster/home/$USER/kent/src/hg/makeDb/trackDb/$OrgName/trackDb.chainNet.ra"
+
+
 # -------------------------------------------------
 # to push to beta:
 
 echo